LOCUS AK108909 1124 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence. ACCESSION AK108909 VERSION AK108909.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1124) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1124 /clone="002-152-G06" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 20..784 /db_xref="Osa1:LOC_Os01g53260" /db_xref="RAP-DB:Os01g0734000" /note="(RAP Annotation release2) Similar to WRKY DNA binding protein" /note="(Rice Genome Annotation Project) OsWRKY23 - Superfamily of rice TFs having WRKY and zinc finger domains, expressed" /note="mapping to R01-TIGRv4S1-001355F (Chr.1: short arm=30931172, long arm=30934924, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG98560.1" /translation="MENLQLQGDDHDDEALPHFPYFAVPSPPPLAVAPAASATTSDGH QHGPLEVLEQPPCSNNLHPDGLVDGPQLAATTAVPMMLPAMTSLDWQSLLQTCLQVPP PVLEQQQPAAAAQADQYSGENDHGDLQAAESSGAGNKEKQVMAKGGAGRPSGTKKKAS RPRFAFQTRSDNDILDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKD TSIVVTTYEGVHNHPCEKLMEALTPILKQLQFLSQF" BASE COUNT 273 a 328 c 321 g 202 t ORIGIN 1 aacctgcgcc gatcgagata tggagaacct ccagctccag ggagatgatc acgacgacga 61 agcgctccct cacttcccct acttcgcggt gccgtcaccg ccgccgctcg ccgtcgcgcc 121 ggcggcatcg gcgacgacgt cggatggtca ccagcacggc ccactcgagg tgctcgagca 181 gccgccgtgt agtaataacc tgcatcccga tggcctggtc gatggccctc agctagcggc 241 gacgacggcg gtgccgatga tgctgccggc gatgacgtcc ttggactggc agtcgctcct 301 gcagacgtgc ctgcaggtac cgcctccggt gctggagcag cagcaaccgg cggcggcggc 361 gcaggcggat cagtacagcg gggagaacga tcacggcgat ctgcaggcgg ccgagagcag 421 cggggcaggt aacaaggaga agcaggtgat ggcgaagggc ggggcgggga ggccgtcggg 481 gacgaagaag aaggcgagcc ggccgcggtt cgcgttccag acgaggagcg acaacgacat 541 cctggacgac ggctaccgat ggaggaagta cgggcagaag gccgtcaaga acagcaagca 601 ccccaggagc tactaccggt gcacgcacca cacgtgcaac gtgaagaagc aagtgcagcg 661 gctcgccaag gacacgagca tcgtggtgac tacgtacgag ggcgtgcaca accacccctg 721 cgagaagctc atggaggccc tcacccccat cctcaagcag ctccagttcc tctcccagtt 781 ctaattaacg acccatatcg atcggtctcg gtcggtctca aactctgaaa tgatcgatct 841 ttcaagttgc tacacaaaca caataacaca cattcacgtg tacatatata cctgcaacaa 901 attaaactct ctgtttagct tggggggaag aaaaggagaa caatgtggcc tacctccccc 961 gtctcccgtc aatacagtac aatatactgc tagttgatca tgtatgtcgt catactgtat 1021 atacgtactc cctgtacgtg tatccttgta tattttcata tgtacgctaa gcttacgcat 1081 atattgtata tgtgacacaa ataatgcccc cggaaagtta aaat //