LOCUS AK108750 1441 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-150-F05, full insert sequence. ACCESSION AK108750 VERSION AK108750.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1441) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1441 /clone="002-150-F05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1441 /db_xref="Osa1:LOC_Os04g32060" /db_xref="RAP-DB:Os04g0390600" /note="(RAP Annotation release2) Oligopeptide transporter OPT superfamily protein" /note="(Rice Genome Annotation Project) transposon protein, putative, unclassified, expressed" /note="mapping to R04-TIGRv4S1-000384F (Chr.4: short arm=19042456, long arm=19044356, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 317 a 345 c 334 g 445 t ORIGIN 1 agcttttaag aacacgtttt atttcaactt taatcctagt tatgttgggt atggtcttat 61 ttccccccat attgtcaact gctcagtttt tcttgggtca gtcatatctt ggggttttct 121 ttggccattt atcgctaagc aagctggtga ttggtaccca gataacctta gtaacactga 181 cttcagaggc ctatatgggt acaaggtttt catagcaatt tctgtcatac ttggtgatgg 241 cctctacaac ttggtaaaag tattccttat tattgcaaag gaaatatgta atgcacgatc 301 aaaagaacat gacctacctg ttcaagctct acttcaagat gatgacagtt ccagacaatt 361 attggacgag aaacgtcaaa ctgagatatt ccttaaagac ggcataccta cttggcttgc 421 tgtttctggt tacattgttc ttgcagcaat atctaccgtg gctgtaccca tcatatttcc 481 ccaactgaag tggtaccttg tccttgtctg ctacttcctt gctcctgcca ttgccttctg 541 caactcttac gggatgggcc tcacaaactt gaaccttgca cccacatatg gcaagattgc 601 cctcttcgtg tttgcctcgc ttgttggcag tgatggtggt gtcattgctg gccttgcagc 661 atgtggtgta atcatgtcaa tcgtctgctc cacagcggat ctcatgcagg acttcaagag 721 cggctatctc accctctcct cgcctcgatc gatgttcatt tcccagatga tcggtgtcgc 781 cctcgggtgc ataatcgctc cactcacact ctggctcttc tggacagcgt ttgacatcgg 841 tgaccctgac ggcgagtaca aggccccatt tgccatcatc ttcagggaga tggccatcat 901 cggcatcgaa ggctttgcgg cgctgccaag gcactgcctt gagatctgct gtgggttctt 961 cttggcagca ctgatcatca acctcatgaa ggatgttgta ccaaaccatg tctccaggtt 1021 catccccatt ccgatggcga tggccgtgcc attctacatt ggcgcgtatt tcggcgtgga 1081 catgttcata gggacattga tcctgttcgc ctggcagaag atagaccgga gagaggctga 1141 tgactatgcg gtggtagttg cgtccggctt gatctgtgga gatggggcct ggagcattcc 1201 ttctgctgtt ctgtccatcc tgggagttga tccaccgatc tgcatgtcct tcaggccatc 1261 ttcagcttct gtatgagacg atggatcaaa actttggagt tttcatgcgg ttatatgatt 1321 gaagctgagc ctctgtaaat gcattcatac aaagtagatt tgtgttgtgt atattttcta 1381 cttctgtgta caattgtgta gaaaatggga cattggaata gagccgttgt ccacgatgaa 1441 c //