LOCUS AK108710 1568 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-150-A11, full insert
sequence.
ACCESSION AK108710
VERSION AK108710.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1568)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1568
/clone="002-150-A11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1568
/db_xref="Osa1:LOC_Os11g28530"
/note="(Rice Genome Annotation Project) ent-kaurene
synthase B, chloroplast precursor, putative, expressed"
/note="mapping to R11-TIGRv4S1-000501R (Chr.11: short
arm=15933331, long arm=15938596, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 364 a 400 c 459 g 345 t
ORIGIN
1 aattcatgca tatctcaatg acactaagcc cttgctggag ttgtacaaaa gttcacaagt
61 tcacttcttg gaagaagatt tcatactaga gaatatcggt tcctggtcag ctaaattact
121 caagcaacaa ctctcgttca acaagatatc gaaatcatta atgccagagg ttgagtatgc
181 ccttaaatat cccttctatg caaccgtgga agtactagag cacaagggga acatagagcg
241 attcaacgta aacggcttcc agcgtctgaa atctggatac tgcggctccg gggcagacaa
301 agaaattcta gctttggctg tcaataaatt ccactacgcc cagtctgttt accaacaaga
361 actccggtat ctcgagagct gggtggcaga atttaggctg gacgagctga aattcgcgag
421 agtgattcca ctgcagtcgc ttttgtctgt gttgtcccct tgttcccctg cgagttgtcc
481 gatgcccgca ttgcttggag ccagaacgcc atactgacgg ctgtggttga tgacttgttc
541 gacggcggag ggtccatgga ggagatgctg aatttggtcg cgttattcga caaatgggac
601 gatcacggtg agattggctt ctgctccagc aacgtagaga ttatgttcaa tgctgtttac
661 aacacgacca agcgtatcgg cgcaaaggcc gcactggtgc agaagcgttg cgtcatcgat
721 catattgccg agcaatggca ggtgatggtg agggccatgc tgaccgaggc agagtgggcg
781 gcgggcaagc acatcccggc aacaatgggg gagtacatgt cggtggcgga gccgtcgttc
841 gcgttgggcc ccatcgtccc cgtgtcggcg tacctgctcg gggaggagct gccggaggag
901 gcggtgcgga gcccggagta cggccgtctc ctggggctcg ccagcgccgt gggccgcctc
961 ctgaacgacg tgatgaccta cgagaaggag atgggcaccg ggaagctcaa cagcgtcgtg
1021 ctgctgcaac ctctcgccgc cggcggcgcc gcctctcgcg gcggcggcgg cgctccggct
1081 ccggctccgg cgtccgtcga ggcggccagg gcggaggtgc ggagggccat ccaggcgtcg
1141 tggagggacc tgcatgggct ggtgttcgga tcaggcggcg gcagcagcag cagcatcatt
1201 ccccggccgt gcagggaggt cttctggcac accgggaagg tggccagcgt cttctaccag
1261 gagggagacg gctacgcacg gaaggcaatg cggagcatgg ccaacgcggt gattctggag
1321 ccactgcacc tgcaagagta acacctgaat taattcctac gtcttgttgc ttggcaaatg
1381 acacatgatg caaatggcca ctctccctcg ctgaacattt tctaaaacta ggaagaaaac
1441 ccgcgcatat gcgcgggcat ttgatttatt cttttacgaa aataatgctt acagaagtca
1501 tatatcattt taatatattt aaatgataag gaggcctcct agattaaata aaatcatttg
1561 ccccgact
//