LOCUS AK107161 1721 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-124-F02, full insert
sequence.
ACCESSION AK107161
VERSION AK107161.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1721)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1721
/clone="002-124-F02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 73..1575
/db_xref="Osa1:LOC_Os02g12680"
/db_xref="RAP-DB:Os02g0218700"
/note="(RAP Annotation release2) Similar to Allene oxide
synthase (EC 4.2.1.92)"
/note="(Rice Genome Annotation Project) cytochrome P450
74A3, putative, expressed"
/note="mapping to R02-TIGRv4S1-000386F (Chr.2: short
arm=6628382, long arm=6630103, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG97978.1"
/translation="MAPPPVNSGDAAAAATGEKSKLSPSGLPIREIPGGYGVPFFSPL
RDRLDYFYFQGAEEYFRSRVARHGGATVLRVNMPPGPFISGNPRVVALLDARSFRVLL
DDSMVDKADTLDGTYMPSRALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAP
AFRAAFAAMFDAVEAGLGAAVEFNKLNMRYMLDFTCAALFGGEPPSKVVGDGAVTKAM
AWLAFQLHPIASKVVKPWPLEELLLHTFSLPPFLVRRGYADLKAYFADAAAAVLDDAE
KSHTGIPRDELLDNLVFVAIFNAFGGFKIFLPHIVKWLARAGPELHAKLATEVRATVP
TGEDDGITLAAVERMPLVKSVVWEALRMNPPVEFQYGHARRDMVVESHDAAYEVRKGE
MLFGYQPLATRDEKVFDRAGEFVADRFVAGGAAGDRPLLEHVVWSNGPETRAPSEGNK
QCPGKDMVVAVGRLMVAELFRRYDTFAADVVEAPVEPVVTFTSLTRASSG"
BASE COUNT 275 a 614 c 543 g 289 t
ORIGIN
1 ctcctcgaac caacccaaca caacacttgc acttgcacta cgtactctca tttcatccgc
61 tcccggccgg caatggcgcc accgccagtg aactccggcg acgccgccgc cgccgccacg
121 ggagagaaga gcaagctctc gccgtcgggc ctccccatac gcgagatacc cggcggctac
181 ggcgtgccct tcttctcgcc gctgcgcgac cgcctcgact acttctactt ccagggcgcc
241 gaggagtact tccgatcacg cgtcgcccgc cacggcggcg ccaccgtgct ccgcgtcaac
301 atgccgcccg gccccttcat ctccggcaac ccccgcgtcg tcgccctcct cgacgcgcgc
361 agcttccgcg tcctcctcga cgactccatg gtggacaagg ccgacacgct cgacggcacc
421 tacatgccgt cgcgcgcgct cttcggcggc caccgcccgc tcgccttcct cgacgccgcc
481 gacccgcgcc acgccaagat caagcgcgtc gtgatgtcgc tcgccgccgc gcggatgcac
541 cacgtcgcgc cggcgttccg cgccgccttt gccgccatgt tcgacgccgt cgaggccggc
601 ctcggcgccg ccgtcgagtt caacaagctc aacatgaggt acatgctcga cttcacctgc
661 gccgcgctgt tcggcggcga gccgccgagc aaggtggtcg gcgacggcgc cgtgacgaag
721 gccatggcgt ggctcgcgtt ccagctgcac ccgatcgcga gcaaggtcgt caagccatgg
781 ccgctcgagg agctactcct gcacaccttc tccctgccgc cgttcctggt gcggcgtggc
841 tacgccgacc tgaaggcgta cttcgccgac gccgccgcgg ccgtcctcga cgacgccgag
901 aagagccaca cgggaatccc gcgcgacgag ctcctcgaca accttgtgtt cgtcgccatt
961 ttcaacgcct tcggcggctt caagatcttc ctgccacaca tcgtcaagtg gctcgcccgc
1021 gccggcccgg agctccacgc caagcttgcc accgaggtcc gcgccaccgt gcccaccggc
1081 gaggacgacg gcatcaccct cgccgccgtc gagcggatgc cgctggtgaa gtcggtggtg
1141 tgggaggcgc tgcgcatgaa cccgccggtg gagttccagt acggccacgc gcggcgcgac
1201 atggtggtcg agagccacga cgcggcgtac gaggtgcgca agggggagat gctgttcggc
1261 taccagccgc tcgccacccg cgacgagaag gtgttcgacc gcgccggcga gttcgtcgcc
1321 gaccggttcg tcgccggcgg cgccgccggc gaccggccgc tgctggagca cgtggtgtgg
1381 tcgaacgggc cggagacgag ggcgccatcg gaggggaaca agcagtgccc cgggaaggac
1441 atggtggtgg cggtggggcg gctgatggtg gcggagctgt tccggcggta cgacacgttc
1501 gccgccgacg tggtggaggc gccggtggag ccggtggtga cgttcacgtc gctgacacgg
1561 gcgtcgtcgg gatagcacgc acgtcgacgt cacgtgcgcg ccgtgctgtg atttagtact
1621 gtactaggtt ggtggatgtt ttaattgcgt ggttaattat taatcacgca taaagtatta
1681 atcatgtttt atcatctaac aacaatgaaa atattaatca t
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