LOCUS AK105619 1695 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-200-C02, full insert
sequence.
ACCESSION AK105619
VERSION AK105619.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1695)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1695
/clone="001-200-C02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1695
/db_xref="Osa1:LOC_Os06g37560"
/note="(Rice Genome Annotation Project)
beta-galactosidase precursor, putative, expressed"
/note="mapping to R06-TIGRv4S1-000725F (Chr.6: short
arm=22247154, long arm=22250722, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 364 a 452 c 544 g 335 t
ORIGIN
1 cctgacgaac cttcacaagg ccatcaagca ggccgagacg gcgctcgttg ccggcgaccc
61 gaccgtccag aacatcggca actacgagaa ggcatacgtg ttcaggtcga gcagcggcga
121 ctgcgcggcg ttcctgtcca acttccacac gagcgcggcg gcgagggtgg cgttcaacgg
181 gcggcggtac gacctcccgg cgtggtccat cagcgtgctg ccggactgca ggaccgccgt
241 gtacaacacc gcgacggtga cggcggcgtc gtcgccggcg aagatgaacc cggcgggcgg
301 gttcacctgg cagtcgtacg gcgaggccac caactcgctg gacgagacgg ccttcaccaa
361 ggacggcctc gtcgagcagc tcagcatgac gtgggacaag tccgactacc tgtggtacac
421 cacctacgtc aacatcgact ccggcgagca gttcttgaag tccggccagt ggccgcagct
481 gaccgtctac tccgccgggc acagcgtgca ggtgttcgtc aacgggcaat acttcggcaa
541 tgcgtatggt ggctacgacg ggccgaagct gacgtacagt gggtacgtca agatgtggca
601 gggcagtaac aagatctcca tcctcagctc cgccgtcggc ctcccgaacg tcggcacgca
661 ttatgagacg tggaacatcg gcgtgctcgg cccggtgacg ctgtccggcc tcaacgaggg
721 gaagagagac ctcagcaaac agaaatggac ataccagatt ggcctgaagg gggagaagct
781 gggggtgcac tccgtcagcg ggagctcctc cgtggagtgg ggcggcgccg ccggcaagca
841 gccggtgacg tggcacagag cctacttcaa cgcgccggcc ggcggcgcgc cggtggcgct
901 ggacctcggc agcatgggga agggccaggc gtgggtgaac ggccacctca tcggccgcta
961 ctggtcctac aaggcctccg gcaactgcgg cggctgcagc tacgccggca cctactccga
1021 gaagaagtgc caggccaact gcggcgacgc ctcccagaga tggtaccatg tcccaagatc
1081 atggctgaat cctagcggga acctggtggt gctgctggaa gagttcggcg gcgacttgtc
1141 cggggtcacg ttgatgacga ggacgacatg aacaggagga agaattgaag tggagatgat
1201 ttgaattgtg gataatttag cagggggaat tgcagaattg gggatttggg agcgaaggaa
1261 agtgggggcg tatagcaatt atctatacat acggcgtaga tacggatacg gctgggtata
1321 cgtacatacg tatacgtata tgaactggta gagtactgtt atttattgat ggctgccgcg
1381 ctggccggcc gtacgccgga gcggctgcag gaactgcggc tccggtcacg gctgccggcg
1441 gccggtgtac ggtcgccgtc gattatttat tattttacta gttatttatt ctgagccgtg
1501 gatgatggct ttgagatcag tgcataggtg cttggagcct tggatcgctt tactctctct
1561 ctctctccaa ttttcttcag ttctatgaga aaatttgcaa cgttgagttg taaatgggaa
1621 cagcacttag aattatgaat gataaattat tgtcacctga tttataccaa gagggaataa
1681 ttattctttt gtact
//