LOCUS AK103582 1908 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033133A13, full insert sequence. ACCESSION AK103582 VERSION AK103582.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1908) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1908 /clone="J033133A13" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 114..1631 /db_xref="Osa1:LOC_Os04g39020" /db_xref="RAP-DB:Os04g0464200" /note="(RAP Annotation release2) Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)" /note="(Rice Genome Annotation Project) betaine-aldehyde dehydrogenase, putative, expressed" /note="mapping to R04-TIGRv4S1-000585R (Chr.4: short arm=22952414, long arm=22957232, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG96152.1" /translation="MAAPSAIPRRGLFIGGGWREPSLGRRLPVVNPATEATIGDIPAA TAEDVELAVSAARDAFGRDGGRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDS GKPLDEAAGDMEDVAACFEYYADLAEALDGKQRAPISLPMENFESYVLKEPIGVVGLI TPWNYPLLMATWKVAPALAAGCTAVLKPSELASLTCLELGGICAEIGLPPGVLNIITG LGTEAGAPLASHPHVDKIAFTGSTETGKRIMITASQMVKPVSLELGGKSPLIVFDDVD IDKAVEWAMFGCFANAGQVCSATSRLLLHEKIAKRFLDRLVAWAKSIKISDPLEEGCR LGSVVSEGQYQKIMKFISTARCEGATILYGGARPQHLKRGFFIEPTIITNVSTSMQIW REEVFGPVICVKEFRTEREAVELANDTHYGLAGAVISNDLERCERISKAIQSGIVWIN CSQPCFVQAPWGGNKRSGFGRELGQWGLDNYLSVKQVTKYCSDEPYGWYRPPSKL" BASE COUNT 474 a 443 c 525 g 466 t ORIGIN 1 gggtgagaga gagtgctcgt cgtcgatcgc ccaaggtccg ggacaaccca aaaggccgcg 61 gcgacagcgg agcagcagca gcagcagctc gcgccgcccc ccaaccggaa gccatggccg 121 cgccgtcggc gatcccccgc cgcggcctgt tcatcggcgg cgggtggcgg gagccgtccc 181 tcggccgccg cctccccgtc gtcaacccgg ccacggaggc aaccatcggt gacatcccgg 241 cggccacggc ggaggacgtc gagctcgcgg tgtcggcggc gagggatgcg ttcggccgcg 301 acggtgggag acactggtcg cgcgcgcctg gggccgtgcg ggccaagtac ctcaaggcga 361 tcgccgctaa gattaaagat aagaaatctt atctagcttt gttggagact cttgattctg 421 ggaagcctct ggatgaagca gctggggaca tggaggatgt cgctgcatgc tttgagtatt 481 atgctgatct ggcagaagct ttagatggga aacaacgggc accaatctct ctacccatgg 541 aaaattttga gtcctatgta ctcaaagaac ccattggggt tgttggactt atcactccct 601 ggaattatcc tctgctgatg gctacttgga aggttgcacc tgccctggct gctgggtgta 661 cagctgtatt aaagccatct gagcttgctt ccctgacatg tttagagctt ggtggaatat 721 gtgcagaaat tggattacct ccaggagtct tgaacataat tactggtctg ggcactgaag 781 ctggtgctcc attagcttca catccccatg tggataagat tgcttttact ggaagcacag 841 aaactggtaa gaggataatg attactgctt cccaaatggt caagcctgtt tcgttagagc 901 ttggtggcaa aagtcctctt attgtctttg atgatgttga tattgataaa gctgttgagt 961 gggccatgtt tgggtgtttt gcgaacgctg gtcaagtctg cagtgctact tctcgtctac 1021 ttttgcatga gaaaattgca aagcgattct tggataggtt ggttgcatgg gcaaagagta 1081 tcaaaatctc agatccacta gaagaaggtt gcaggctggg gtcagtcgtt agtgaagggc 1141 agtatcaaaa aataatgaag ttcatctcaa cagcaagatg tgaaggtgcc acaattctat 1201 atgggggtgc ccgaccacaa cacctcaaaa gggggttctt tattgagcct actattataa 1261 caaatgttag cacatcaatg caaatttggc gagaggaagt ctttggaccg gtcatctgcg 1321 ttaaagaatt taggacagag cgtgaagcag tagaacttgc aaatgatact cactatggtc 1381 tagctggcgc tgtgatttcc aatgatctag agaggtgcga gcgcatttca aaggctatcc 1441 agtcaggtat cgtttggata aattgctcgc aaccatgctt tgttcaagct ccatggggag 1501 ggaacaagcg gagtggtttt ggccgggagc taggacagtg gggcctcgat aactacttga 1561 gcgtgaagca agtcaccaag tactgctcag atgaaccata cggatggtac cggcctccat 1621 ccaagctgta gatttgtcat tcgtgtcaag agcgacggag cacgtcatta cctgaaagca 1681 agatcaaccc tgtacattca gaacggacgg acagaatctt ctttacagtt gctcttacgg 1741 tcttacaata agccttgcat ggcaatagca acttatgaat tacagtatat gatactgcgt 1801 catcaagcaa gccatgtgtg tgctgtatca gactatcatt cgctttgtcg agcacctgca 1861 tttgtcacca ctcaccactg ttaaagcaag aatgcaaaat gcaaaatg //