LOCUS AK103312 3550 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033125G19, full insert
sequence.
ACCESSION AK103312
VERSION AK103312.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3550)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3550
/clone="J033125G19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3550
/db_xref="Osa1:LOC_Os06g48950"
/db_xref="RAP-DB:Os06g0702600"
/note="(RAP Annotation release2) Similar to Auxin
response factor 7a (Fragment)"
/note="(Rice Genome Annotation Project) auxin response
factor 19, putative, expressed"
/note="mapping to R06-TIGRv4S1-001032F (Chr.6: short
arm=29656102, long arm=29664064, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 957 a 890 c 859 g 844 t
ORIGIN
1 gtcagcatca ccaccaccct actctctctc tctagctagg gttgcgctgc ttcggtctcg
61 gtcttggcgc cgcctgcctc gcccttcttg ctcgcccctg ctcccctgtc cctctcgtgt
121 cggggcgacg gacggacatc ctcacccgcg cgcacgtacg ggtgatcgat cgattgattc
181 ctgctccgac gaagacggcg gcggcgccgg tgacctcgcc ggacatgcgc ggggcccgct
241 gaggtctttg ttgccggcga aaggggtgga gtgattgact cggtcggtgt ctgcctgtct
301 ggtctgaggt catgatgaag caggcgcagc agcagccgcc gccgccaccg gcgagctctg
361 cggcgacgac gaccaccgcg atggcagccg ctgcggcggc ggcggtggtg gggagcgggt
421 gcgaagggga gaagacgaag gcgccggcga tcaactcgga gctgtggcac gcctgcgcgg
481 ggccgctggt gtcgctgccg ccggcgggca gcctcgtcgt ctacttcccc cagggccaca
541 gcgagcaggt tgcagcctct atgcaaaagg atgttgatgc acatgttcca agctacccaa
601 atctgccttc aaagttgatt tgccttctgc ataacgtcac tttacatgcg gacccagaaa
661 cagatgaagt gtatgcacaa atgactcttc agccagttac ttcatatggg aaggaggccc
721 tgcagttatc agagcttgca ctcaaacaag cgagaccaca gacagaattc ttttgcaaga
781 cactgactgc aagtgataca agtactcatg gaggcttctc tgtgcctcgt cgagctgcag
841 aaaagatatt tcctccactg gacttctcaa tgcaaccacc tgcacaagaa ctacaggcca
901 gggatttgca tgataatgtg tggacattcc gtcacatata tcggggtcag ccaaaaaggc
961 atctgcttac cactggctgg agtctatttg taagcggcaa gaggttattt gctggagatt
1021 ctgtcatttt tatcagggat gaaaagcagc aacttctatt aggaatcagg cgtgctaacc
1081 gacagccaac taacatatca tcatctgtcc tttcaagtga cagcatgcac atagggattc
1141 ttgctgctgc agcccatgct gctgccaaca atagcccatt taccatcttt tataacccta
1201 gggccagtcc tactgaattt gttatcccat ttgctaagta tcagaaggca gtctatggta
1261 atcaaatatc tttagggatg cgctttcgca tgatgtttga gactgaggaa ttaggaacac
1321 gaagatacat gggaacaata actggcataa gtgatctaga tccagtaaga tggaaaaact
1381 cgcagtggcg caacttacag gttggttggg atgaatccgc agccggtgaa aggcgaaata
1441 gggtttctat ctgggagatt gaaccggtcg ctgctccatt tttcatatgt cctccaccat
1501 tttttggtgc gaagcggccc aggcaattag atgacgagtc ctcggaaatg gagaatctct
1561 taaagagggc tatgccttgg cttggtgagg aaatatgcat aaaggatcct cagactcaga
1621 acaccataat gcctgggctg agcttggttc agtggatgaa catgaacatg caacagagct
1681 cctcatttgc gaatacagcc atgcagtctg agtaccttcg atcattgagc aaccccaaca
1741 tgcaaaatct tggtgccgcc gatctctcta ggcaattatg cctgcagaac cagcttcttc
1801 aacagaacaa tatacagttt aatactccca aactttctca gcaaatgcag ccagtcaatg
1861 agttagcaaa ggcaggcatt ccgttgaatc agcttggtgt gagcaccaaa cctcaggaac
1921 agattcatga tgctagcaac cttcagaggc aacaaccttc catgaaccat atgcttcctt
1981 tgagccaagc tcaaaccaat cttggccaag ctcaggtcct tgtccaaaat caaatgcaac
2041 agcaacatgc atcttcaact caaggtcaac aaccagctac cagccagccc ttgcttctgc
2101 cccagcagca gcaacagcag cagcagcagc agcaacaaca acaacaacag caacaacaac
2161 aaaaattgct acaacagcag cagcaacagc ttttgctcca gcaacagcag caattgagta
2221 agatgcctgc acagttgtca agtctggcga atcagcagtt tcagctaact gatcaacagc
2281 ttcagctgca actgttacaa aaactacagc aacaacagca gtcattgctt tcacaacctg
2341 cagtcaccct tgcacaatta cctctgatcc aagaacagca gaagttactt ctggatatgc
2401 aacagcagct gtcaaactcc caaacacttt cccaacaaca aatgatgcct caacaaagta
2461 ccaaggttcc atcacagaat gatggacttc tacatcaaaa tttccctatg tccaacttca
2521 accagccaca gatgttcaaa gatgctcctc ctgatgctga aattcatgct gctaatacaa
2581 gtaacaatgc attgtttgga atcaatggtg atggtccgct gggcttccct ataggactag
2641 gaacagatga tttcctgtcg aatggaattg atgctgccaa gtacgagaac catatctcaa
2701 cagaaattga taatagctac agaattccga aggatgccca gcaagaaata tcatcctcaa
2761 tggtttcaca gtcatttggt gcatcagata tggcatttaa ttcaattgat tccacgatca
2821 acgatggtgg ctttttgaac cggagttctt ggcctcctgc cgctccctta aagaggatga
2881 ggacattcac caaggtatat aagcgaggag ctgtaggccg gtccattgac atgagtcagt
2941 tctctggata tgatgaatta aagcatgctc tggcacggat gttcagtata gaggggcaac
3001 ttgaggaacg gcagagaatt ggttggaagc tcgtttacaa ggatcatgaa gatgacatcc
3061 tacttcttgg cgacgaccca tgggaggaat ttgtcggttg cgtgaaatgc attaggatcc
3121 tttcacctca agaagttcag cagatgagct tggagggttg tgatctcggg aacaacattc
3181 ccccgaatca ggcctgcagc agctcagacg gagggaatgc atggagggct cgctgcgatc
3241 agaactccgg taacccttcc aatggttcat atgaacaatt cgaatgacca aattcaccag
3301 tccatattgt catgctgcgc cggtgtaagt agacaatcac cggagtgttg ttgtagatgt
3361 tatcagctta catccgggag cgcaaatggc tcggcggatc agtagtgttt tttttgtcta
3421 tatgtgtagt ttctcacaca tcaaaaggga gtagggatgg taaatgaaac ttacctagag
3481 tttcttaagg ttaggcgaaa gatgattgta ctgttggaaa ggcagttctg tagtaaaatg
3541 attcttctcc
//