LOCUS AK103272 2191 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033124I10, full insert
sequence.
ACCESSION AK103272
VERSION AK103272.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2191)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2191
/clone="J033124I10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 283..1866
/db_xref="Osa1:LOC_Os10g34230"
/db_xref="RAP-DB:Os10g0483500"
/note="(RAP Annotation release2) FAD linked oxidase,
N-terminal domain containing protein"
/note="(Rice Genome Annotation Project) cytokinin
dehydrogenase 5 precursor, putative, expressed"
/note="mapping to R10-TIGRv4S1-000495F (Chr.10: short
arm=17940720, long arm=17944920, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG95988.1"
/translation="MEVAMVCTRVNLLILILSLCSPYKFIQSPMDFGPLNLLPTTTTA
SSDFGRILFHSPSAVLKPQAPRDISLLLSFLSASPLGKVTVAARGAGHSIHGQAQALD
GIVVEMSSLPSEIEFYRRGEGDVSYADVGGGIMWIELLEQSLKLGLAPRSWTDYLYLT
IGGTLSNAGISGQTFKHGPQISNVLQLEVVTGRGEIVTCSPTKDAELFNAVLGGLGQF
GIITRARILLQEAPQKVKWVRAFYDDFATFTKDQELLVSMPVLVDYVEGFIVLNEQSL
HSSSIAFPTNVDFNPDFGTKNNPKIYYCIEFAVHDYQNKNINVEQVVEVISRQMSHIA
SHLYSVEVSYFDFLNRVRMEEMSLRNSGLWEVHHPWLNMFVPSAGISDFRDLLMDSIS
PDNFEGLILIYPLLRHKWDTNTSVVLPDSGSTDQVMYAVGILRSANPDDGCSHHCLQE
LLLRHRRLAGAAASGLGAKQYLAHHPTPAGWRRHFGRRWERFADRKARFDPRCILGPG
QGIFPRDSSSSNGAFASYS"
BASE COUNT 493 a 605 c 560 g 533 t
ORIGIN
1 aaaaaacctc atagcctcat cagctgatca ctgagtgcct tctccttctc ctcctccttt
61 aagaaccctc ttccctgccc atccttttct tcatcccctc aactttgcct aaaaggcaag
121 aacaaagcca tatgattctc tgatcccttc ttccaagctg catcccaaca caacacattg
181 tggtgacaca gcaaacataa tatacacaca tcctcttctt cttctaccac cctccatatt
241 cctgcaagaa acaactggag gaagaatcac tactccaaca ccatggaggt tgccatggtc
301 tgcacaagag ttaacctgct catcctcatc ctttctctct gctccccata caagtttata
361 cagagcccca tggactttgg ccctttgaac ctccttccca ccaccaccac tgcatccagt
421 gactttggta gaatcctctt ccactcccca tctgcagttc taaagcccca agctccaagg
481 gatatatccc tgcttctcag cttcctctct gcctcacctc ttggcaaggt gacggtggca
541 gccaggggag caggtcactc catccatgga caggcacagg cccttgatgg cattgtagtg
601 gagatgagct ccttgccttc tgagattgaa ttctacagaa gaggagaagg agatgtttct
661 tatgctgatg tgggtggtgg aatcatgtgg attgagcttc tggagcagag cttgaagctt
721 gggctggctc caaggtcttg gactgattac ctctatctca ccattggtgg aaccttgtcc
781 aatgctggca tcagtgggca gacattcaag catggacctc agattagcaa tgttctacag
841 ctggaagtag tcacaggcag gggtgagatt gtgacctgtt cacccaccaa ggatgcagag
901 ctattcaatg ctgttcttgg aggccttggg cagttcggca tcattactag ggcaaggatc
961 ctgctgcagg aagctccaca gaaagtgaag tgggttagag ccttctatga tgatttcgcc
1021 accttcacca aagaccagga gttgctggtg tcaatgccgg ttttggtgga ctatgtggaa
1081 ggtttcatcg tgttgaatga gcaatccctt cacagctcct ccattgcctt ccctacaaat
1141 gttgacttca acccagattt tggcaccaag aacaacccta agatctacta ctgcatagag
1201 tttgctgtcc acgattacca gaacaagaac atcaatgtgg aacaggtcgt ggaagtcatc
1261 tcaaggcaga tgagccacat agcatcccac ttgtatagcg tggaggtgtc ctactttgat
1321 tttctcaaca gggttaggat ggaggagatg agccttagga acagtgggct ctgggaggtg
1381 caccatccat ggttgaacat gttcgtgcca agcgctggga ttagtgactt cagggacctg
1441 ctcatggaca gcatctcacc ggataacttc gagggcctca tcctcatcta cccactcctc
1501 agacacaagt gggacaccaa cacgtcggtc gtgttaccgg actccgggtc gacggaccag
1561 gtgatgtacg cggtgggcat cctccggtcg gcgaaccccg acgacgggtg ctcccaccac
1621 tgcctccagg agctcctcct ccgccaccgc cgcctcgccg gcgccgccgc gtcgggcctc
1681 ggcgcgaagc agtacctcgc ccaccacccg accccggccg gctggcgccg ccacttcggc
1741 cggcggtggg agcggttcgc cgatcgcaag gcccggttcg acccgaggtg catcctcggg
1801 ccaggccagg gtatattccc cagggacagc agcagcagca atggcgcatt tgcaagctat
1861 agctgacacg agaaagtgca gtgtagtgct gtgctgtgcc gtgccgtgcc gtgccgtgac
1921 agctggtggt acaataagag ggggacatag gataggcagg cgaggctagg agggagatct
1981 tgttctttct tttcgatagc tttcttttct gcttcgattt gaggccggca tcgttttggt
2041 tggttgatgt ggttgggcgg gggttgattt tgaacggatc ctcggtggtg gtgatcacca
2101 tcatcactgg gaattttgga actttgtaca ggctgaggaa gcaagaacag ctctagggcg
2161 aaaggatagt gatagcgatt ctatttcgac c
//