LOCUS AK103266 1562 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033124G19, full insert
sequence.
ACCESSION AK103266
VERSION AK103266.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1562)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1562
/clone="J033124G19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 198..1157
/db_xref="Osa1:LOC_Os02g30910"
/db_xref="RAP-DB:Os02g0513100"
/note="(RAP Annotation release2) Similar to MtN3 protein
precursor"
/note="(Rice Genome Annotation Project) MTN3, putative,
expressed"
/note="mapping to R02-TIGRv4S1-000721R (Chr.2: short
arm=18448538, long arm=18451268, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95984.1"
/translation="MAFMSMERSTWAFTFGILGNLISLMVFLSPLPTFYRVYRKKSTE
GFQSTPYVVTLFSCMLWMYYAFVKSGAELLVTINGVGCVIETVYLAMYLAYAPKSARM
LTAKMLLGLNIGLFGVIALVTLLLSRGELRVHVLGWICVAVSLSVFAAPLSIIRLVIR
TKSVEFMPFSLSFFLVLSAVIWFLYGLLKKDVFVALPNVLGFVFGVAQMALYMAYRSK
KPLVASSSSAVVAAGLEIKLPEHVKEVQAVAKGAVAAAPEGRISCGAEVHPIDDVMPS
EVVEVKVDDEETNRTDEMAGDGDHAMVRTEQIIKPDMAIVVEV"
BASE COUNT 307 a 416 c 465 g 374 t
ORIGIN
1 catgaaccca agccacatct tagcttaatt acatagctcc tcctcctttc tccactgact
61 gctcagtgtg ttttgcatct ctccattgag caagaggaga agggaggctc agctagctag
121 ctagctacca tctatactag tatcaagttt ttttgttcag atttttttgt tggaggaaga
181 gttctaggga gatcgatatg gccttcatgt ccatggaacg cagcacttgg gccttcacct
241 ttggcatctt aggtaactta atctcactaa tggtattcct ttcgccactg ccgacgttct
301 accgggtgta ccggaagaag tcgacggagg ggttccagtc gacgccgtac gtggtgacgc
361 tcttcagctg catgctgtgg atgtactacg cgttcgtcaa gtccggcgcc gagctgctgg
421 tcaccatcaa tggtgtgggg tgcgtcatcg agaccgtcta cctcgccatg tacctcgcct
481 acgcccccaa gagcgccagg atgctcacgg cgaagatgct gctcggcctc aacatcggcc
541 tcttcggcgt catcgcgctc gtcacgctgc tgctctcccg cggcgagctc cgcgtccacg
601 tcctcggctg gatctgcgtc gccgtctcgc tcagcgtctt cgccgctccc ttgagcatca
661 tcaggctggt gatccggacc aagagcgtgg agttcatgcc attctcgcta tccttcttcc
721 tggtgcttag cgcggtgatc tggttcttgt acgggctgct caagaaggac gtgttcgtgg
781 cgctgcccaa cgtgctgggc ttcgtgttcg gcgtggcgca gatggcgctg tacatggcgt
841 accggagcaa gaagccactg gtggcgtcgt cgtcgtccgc cgtggtggcg gccgggctgg
901 agatcaagct gccggagcat gtcaaggagg tgcaggccgt cgccaagggc gccgtcgcgg
961 cagcgccgga gggcaggatc agctgcggcg cggaggtgca ccccatcgac gacgtgatgc
1021 cctcggaggt ggtggaggtg aaggtggatg acgaggagac gaaccgtacg gacgagatgg
1081 ccggtgacgg cgatcacgct atggtcagaa cggagcagat catcaagcct gacatggcca
1141 ttgttgtgga agtgtagtct gattaagctt agagaactag tagtaattct ctcatgtgag
1201 gtatagccag ctagctggtg gtacacaaac ataaacacga acacatgttc atcgcgtacg
1261 tactagctac taggtgagac acctcttggc gtagtacgta cagtagtact ccggccagat
1321 ctagtaggga ctgtattggc gcgtgactcg cctggttcgt ccagcttgca tgcagagacc
1381 gaccgagcaa gcaagctaat taagctggcc cgaccgaccg agtgcatgcg tgttttgtga
1441 acctagctac tgagggggga gtgaagggtg tgggtgtgca atcgaccggc ctgtcgcgtc
1501 gatgctcttg cttagcttca ttcgattcat gcagttcaat aataaaattt ggattttact
1561 gc
//