LOCUS AK102756 2847 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033107B05, full insert
sequence.
ACCESSION AK102756
VERSION AK102756.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2847)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2847
/clone="J033107B05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2847
/db_xref="Osa1:LOC_Os06g37560"
/db_xref="RAP-DB:Os06g0573600"
/note="(RAP Annotation release2) Similar to
Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)"
/note="(Rice Genome Annotation Project)
beta-galactosidase precursor, putative, expressed"
/note="mapping to R06-TIGRv4S1-000725F (Chr.6: short
arm=22244388, long arm=22250550, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 598 a 850 c 869 g 530 t
ORIGIN
1 ggcttcttct gcttcacgct ttcaccattt cacccctcac gccttgctct ctctctcttc
61 cctctccaat ggtgaacaga atggcggtaa tccaaaagcg agggaataca atcaaaccaa
121 gaaattaaat ttaaatgaga agaaaaaatg cacagataat ataaattgag acaccgaaat
181 caagaactcg tataaaaagc ccaccaccac caccgcttct ctcctctccc actcctctcc
241 ttctccttct ccttcttctt cctccattgg catctccaag aaacccaagc ctttctacgt
301 gcttcgagct cggccaccgg ccggcggacg cgcgcgcgcc agccaccatg tccggcggcg
361 ccgtcgcctt cctcctgctc gtcgccgccg ccgccgtggc caatgccgcc gtcacctacg
421 accgcaggtc gctcaccatc aatggccagc gccgcatcct catctccggc tccatccact
481 accctcgcag cacccccgag atgtggccgg acctgatcca gaaggccaag gacggcggcc
541 tcgacgtgat ccagacctac gtcttctgga acggccacga gccagtgcag ggacagtact
601 acttcagcga caggtacgac ctggtgaggt tcgtgaagct ggtgaagcag gcagggctct
661 atgtcaacct ccgcatcggc ccctacgtct gcgccgaatg gaactacggt gggtttcctg
721 tctggctcaa gtacgtcccg ggcatcagct tcaggactga caatggtcca ttcaaggcgg
781 cgatgcagac gttcgtggag aagatcgtgt cgatgatgaa atcggaaggg ctgttcgagt
841 ggcagggcgg cccgatcatc ctcgcccagg tagagaacga gtacgggccg atggagtcgg
901 tgatgggcag cggcgcgaag tcgtacgtcg actgggcggc gaagatggcc gtcgccacca
961 acgccggcgt gccctggatc atgtgcaagc aggacgacgc ccctgacccc gtgatcaaca
1021 cctgcaacgg attctactgc gacgacttca cccccaactc caagaacaag ccttccatgt
1081 ggacagaggc ctggagcggc tggtttacgg ctttcggtgg cacggtgccg cagcggccag
1141 tggaggatct ggcgttcgcc gtggcgaggt tcatccagaa gggcggctcc ttcatcaact
1201 actacatgta ccatggcggc accaactttg accggacagc tggcggcccg ttcatcgcga
1261 cgagctacga ttatgatgcg ccgatcgatg aatacggtct gcttcggcag cccaaatggg
1321 gtcacctgac gaaccttcac aaggccatca agcaggccga gacggcgctc gttgccggcg
1381 acccgaccgt ccagaacatc ggcaactacg agaaggcata cgtgttcagg tcgagcagcg
1441 gcgactgcgc ggcgttcctg tccaacttcc acacgagcgc ggcggcgagg gtggcgttca
1501 acgggcggcg gtacgacctc ccggcgtggt ccatcagcgt gctgccggac tgcaggaccg
1561 ccgtgtacaa caccgcgacg gtgacggcgg cgtcgtcgcc ggcgaagatg aacccggcgg
1621 gcgggttcac ctggcagtcg tacggcgagg ccaccaactc gctggacgag acggccttca
1681 ccaaggacgg cctcgtcgag cagctcagca tgacgtggga caagtccgac tacctgtggt
1741 acaccaccta cgtcaacatc gactccggcg agcagttctt gaagtccggc cagtggccgc
1801 agctgaccgt ctactccgcc gggcacagcg tgcaggtgtt cgtcaacggg caatacttcg
1861 gcaatgcgta tggtggctac gacgggccga agctgacgta cagtgggtac gtcaagatgt
1921 ggcagggcag taacaagatc tccatcctca gctccgccgt cggcctcccg aacgtcggca
1981 cgcattatga gacgtggaac atcggcgtgc tcggcccggt gacgctgtcc ggcctcaacg
2041 aggggaagag agacctcagc aaacagaaat ggacatacca gattggcctg aagggggaga
2101 agctgggggt gcactccgtc agcgggagct cctccgtgga gtggggcggc gccgccggca
2161 agcagccggt gacgtggcac agggcctact tcaacgcgcc ggccggcggc gcgccggtgg
2221 cgctggacct cggcagcatg gggaagggcc aggcgtgggt gaacggccac ctcatcggcc
2281 gctactggtc ctacaaggcc tccggcaact gcggcggctg cagctacgcc ggcacctact
2341 ccgagaagaa gtgccaggcc aactgcggcg acgcctccca gagatggtac catgtcccaa
2401 gatcatggct gaatcctagc gggaacctgg tggtgctgct ggaagagttc ggcggcgact
2461 tgtccggggt cacgttgatg acgaggacga catgaacagg aggaagaatt gaagtggaga
2521 tgatttgaat tgtggataat ttagcagggg gaattgcagg attggggatt tgggagcgaa
2581 ggaaagtggg ggcgtatagc aattatctat acatacggcg tagatacgga tacggctggg
2641 tatacgtaca tacgtatacg tatatgaact ggtagagtac tgttatttat tgatggctgc
2701 cgcgctggcc ggccgtacgc cggagcggct gcaggaactg cggctccggt cacggctgcc
2761 ggcggccggt gtacggtcgc cgtcgattat ttattatttt actagttatt tattctgagc
2821 cgtggatgat ggctttgaga tcagtgc
//