LOCUS AK101758 1637 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033063M08, full insert
sequence.
ACCESSION AK101758
VERSION AK101758.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1637)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1637
/clone="J033063M08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1637
/db_xref="Osa1:LOC_Os05g48700"
/db_xref="RAP-DB:Os05g0560900"
/note="(RAP Annotation release2) Isopenicillin N synthase
family protein"
/note="(Rice Genome Annotation Project) gibberellin
2-beta-dioxygenase, putative, expressed"
/note="mapping to R05-TIGRv4S1-001055R (Chr.5: short
arm=27827530, long arm=27829652, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 276 a 483 c 563 g 315 t
ORIGIN
1 gaagtgcaaa cgtgcagcag cagaggcagc aacacctccc ctgttcttgc tctgtttcct
61 cactctgttg gtacacaaca aaaagaagaa gcttaattag gtggtttttg atctgatcac
121 gcgccatggt ggcgatcacg gcgccgagct ccatcgagca catcccgctg gtgaggtgcc
181 ccaagggcgc caatgccggg ccgcaagctg tcatcccgtg catcgacctg tcggcaccgg
241 gcgcggcggc ggcggtggcc gacgcgtgcc gcaccctggg gttcttcaag gcgaccaacc
301 acggcgtccc cgcggggctc gccgacgcgt tggagtcgag cgccatggcg ttcttcgcgc
361 tcccgcacca ggagaagctc gacatgtccg gccccgcccg gcccctcggc tacggcagca
421 agagcatcgg gtcgaacggc gacgtggggt ggctggagta cctcctcctc tcggccggcg
481 ccgcctcgtc cggcggcgcg gcgctgccgg cggcgctgag ggcggcggtg gaggcgtaca
541 cgggggcggt gaggggggtg gggtgcaggg tgatggagct gatggcggag gggctggggc
601 tgggggcgtc ggaggagggg aggtgcgtgc tgcggcggat ggtggtgggg tgcgagggca
661 gcgacgagat gctgcgggtg aaccactacc cgccgtacct cctcccgccg ggccgcgacc
721 gggacgagtg cggcgtgacg ggcttcgggg agcacacgga cccacagatc atctccgtgc
781 tcaggtccaa ctgcaccgcg ggcctccaga tcctcctccg cggagactac tcctcccctg
841 cccgctgggt ccccgtgccc cccgaccccg attccttctt cgtcaacgtc ggcgactccc
901 tccaagtgtt gacgaatggg aggttcagga gcgtgaagca cagggtgttg gcgccggagg
961 gggaggagtc gaggctgtcg gtgatctact tcggcgggcc agcggcgtcg cagcggatcg
1021 cgccgctgga gcaggtgatg cgggaggggg agcagagcct gtacagggag ttcacctggg
1081 gggagtacaa gaaggccgcc tacaagacgc gcctcggcga caaccgcctc ggcccctacg
1141 agctgcagca cgccgctgcc aacgatgagg ccgcgacgaa gaaataaatc gatcaacccg
1201 acgactgtga acaactgtga agtgttactg tactagtgta gttagctccg tggtactggt
1261 agctgtgaat atgatcgaga tcgatcgatc gatcgatcta tccttgtgtt gtgttacttt
1321 taacccattt ctggtaacta aaggccgccg ttgccttggc ttgcttggcc agcccaaaac
1381 tggcactggc gagctgcctc ctcctgcatg cctctgctgt gcagtagtgc agcagtactc
1441 ctctgtcctg gggttttctg cagcagagca gtggagtgca gttcagtgca gcgttgtgca
1501 tgttgtgtaa aatagcttgc cgcatgcata tgtgattatg tgctgctcct gtcgacgctg
1561 ccgccccttt tgtagcatgg tttttaccgg ctgggcggtc ggcaggtgca gtagtagcta
1621 atgatgctta ctgcgcc
//