LOCUS AK101388 2403 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033036G08, full insert
sequence.
ACCESSION AK101388
VERSION AK101388.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2403)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2403
/clone="J033036G08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 517..1908
/db_xref="Osa1:LOC_Os02g40860"
/db_xref="RAP-DB:Os02g0622100"
/note="(RAP Annotation release2) Similar to Dual
specificity kinase 1"
/note="(Rice Genome Annotation Project) casein kinase I
isoform delta-like, putative, expressed"
/note="mapping to R02-TIGRv4S1-001008F (Chr.2: short
arm=24760940, long arm=24766880, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG95038.1"
/translation="MEHVIGGKFKLGRKIGSGSFGELYLGVNIQSSEEVAIKLESVKS
RHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFSL
KTVLMLADQMINRVEYMHTRGFLHRDIKPDNFLMGLGRKASQVYVIDYGLAKKYRDLQ
THKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKA
GTKKQKYDKISEKKMLTPVEVLCKSYPTEFISYFHYCRSLRFEDKPDYSYLKRLFRDL
FIREGYQLDYIFDWTKQGSESNRLRSSGRTSGLVGPSAERTERAAARQDVPDRFSGTV
DPFARRTGSGSGHYGEHTKHRNILDSLLAPKTAVDLDKRRPTSSSRNGSTSRKALLSS
SRPSSGDPIDPNRSNLIPTSSGSSRPSTMQRLHQSTGLETRSSLTKTARNVHDDPTLR
TFERLSISADRRK"
BASE COUNT 661 a 576 c 553 g 613 t
ORIGIN
1 gggggtaccc ataatctcca catcctcctc ctcccacctc tactccggcc accggccgcc
61 tcctcccacg ctccccccgc cgccgccgcc gccgccgccg ccgccatcgc cacccgcctc
121 ctccttctag cagtagtaat aaaggaagga agaaaatcca ccgccctacc cctatctatc
181 cgttgcctca cgtccgtttc ccacattttc cgcttccttc gtccatcgcc atctattaac
241 ccgccccccc acgattcctg ccgagaaatt tctccccccc acagagaggg aggcgatccc
301 tagcctcgtc ctgaatctcg cggcgccgcc aattcgatct gcccgcgccg tctcagggcg
361 gcgaatcttg ggctggagtc ggggggagag atccgggatc ttccttttct tgggtgttcc
421 cgggacgcaa atcttgcggc cgccgggcaa tgtgactggg gttcttgtgg ggggtgaggc
481 gattcgcgcg cgcattcggt gctgaatctt gcggggatgg agcatgtgat cggggggaag
541 tttaagctgg ggaggaagat tgggagcgga tcttttgggg agctatacct tggtgtgaat
601 atacagagca gcgaggaggt agccatcaag ttggaatctg taaaatcaag gcatcctcag
661 cttcattatg agtcaaaact atacatgctt ctgcaggggg gaactggaat tcctcatctg
721 aagtggtttg gagtggaggg ggagtacaat gtcatggtta tcgatcttct tggtccaagt
781 ttagaggact tattcaacta ctgcaacaga aagttttctc ttaaaacagt acttatgctt
841 gctgatcaga tgatcaacag ggtagagtac atgcacacta gggggtttct acatcgtgat
901 atcaagccag acaacttcct tatgggttta ggccgcaaag caagccaggt ttatgtcatc
961 gactatggtc ttgcaaagaa ataccgggac ctccaaactc ataagcatat accttacagg
1021 gagaacaaaa atctcacagg aacagcacgc tatgctagtg taaacaccca tcttggagta
1081 gaacaaagca ggagagatga tttagagtct ctgggctatg tgcttatgta tttcttaaga
1141 ggaagccttc cttggcaagg tctaaaagct ggcacaaaaa aacagaaata tgacaaaatt
1201 agtgaaaaga aaatgcttac tccagttgag gttctctgta aatcttatcc cacagagttc
1261 atttcatact tccattactg tcgatctttg cgatttgaag ataaaccaga ctacagctat
1321 ttgaagagac ttttccgaga tctattcatc cgtgaagggt accagcttga ttatatattt
1381 gattggacga agcaaggttc agaaagtaac agattgcgat caagtggaag gacaagtggg
1441 ttggtgggac catctgcaga acggactgaa cgagctgcag caagacagga tgttcctgac
1501 agattctctg gtacagtcga tccatttgct agaagaactg gctctggttc tggccattac
1561 ggagagcaca caaagcacag aaatatattg gattcattac ttgcacccaa gacggctgtt
1621 gatttagata aaagaaggcc cacatcatca tctcgtaatg ggagcacatc aaggaaggct
1681 ctcttgtcaa gcagcagacc aagttctgga gatcccattg atccgaaccg cagtaaccta
1741 attccaacca gcagtggcag cagtcgccca tcaactatgc agaggcttca ccagtcaaca
1801 ggacttgaga ccaggtcctc gcttaccaaa actgcaagaa atgtccatga tgatcccact
1861 ttgaggacct ttgaacgcct ttcaatcagt gctgacagaa ggaaataatg cttcgaagag
1921 caaaagatgt gagttgctgc tccagtgagg acactgggga ttccttcaca cgatgattac
1981 tgatcaacaa gtaaaaacca ttctgtgcta cagatgatgc tgagatatgc ttaagagtga
2041 agtttgctta ctgaatcttg gcgcaaaaga aatggttaaa gaaatcattt tacacgccat
2101 tcagaagaac ccggaccagc aactgtgctg gtccaattaa tgctgatgtt gatcaaatat
2161 ttgtagaaat gttattgaaa taaagcagtt cattactagc aaaatatgta ctatcacgta
2221 gtatttcctt tgtgcactgc aactagaact tctgccactc tgccactata ctcttaagat
2281 aatcaatatc cttttttgcc ttagtgccct ttagatactc cgtcacatta tttccttaaa
2341 aacttggaga tcatgtaatc gttattaata tatcatacga tcagatatcg ttattcaact
2401 agc
//