LOCUS       AK101212                2254 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033031B02, full insert
            sequence.
ACCESSION   AK101212
VERSION     AK101212.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2254
                     /clone="J033031B02"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             28..1998
                     /db_xref="Osa1:LOC_Os02g53680"
                     /note="(Rice Genome Annotation Project) replication
                     protein A 70 kDa DNA-binding subunit, putative, expressed"
                     /note="mapping to R02-TIGRv4S1-001465R (Chr.2: short
                     arm=32827090, long arm=32830404, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG94958.1"
                     /translation="MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGE
                     RFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLE
                     VLVSECEIIGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLF
                     QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALN
                     PYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEV
                     VEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPI
                     NEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDF
                     CNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQW
                     FDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKN
                     ESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTA
                     WVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDER
                     KVKNTAVKVEKVDPSGESKFLLDLISKSSALH"
BASE COUNT          593 a          512 c          595 g          554 t
ORIGIN      
        1 ggaggtggag gagggcggcg ggtggcgatg gcgatggcga ggctgacgcc gaacggcgtg
       61 gcggcggcgc tggcggggga cacgaacctg aagccggtgc tgcagatcgt cgagctgcgg
      121 ggcgtccagg tcaacggcgc gggcgtcacg cgcggggaga ggttccgggc ggtggtctcc
      181 gacggcaccg ccgcgtcctc cgcgctcttc gccgcgcagc tcagcgacca cgcccgatcc
      241 ggcgccctcc gacgcggcag cattgtgcag ctcagcgagt acgtcatcaa cgaagtcggc
      301 cccagaagga ttattgtcat tctgaacctg gaagttcttg tttcggagtg tgagataatt
      361 gggaatccta cagcgctttc agaaactgga tctcctatcc caaatccgac aagagtagag
      421 caatttaacg gagcacctca atatggtttg atggcaggga actcatcaaa tacaaccaca
      481 aagcctagtg acaatgttcc attgttccaa aattcgatgg caggaaactc ctctaacttt
      541 gccactaggc ccagtgacaa agttccggtc ttccaaccaa cagtccagcc atcttatcgc
      601 cctgcaccta attacaaaaa ccatggagca atcatgaaaa atgaagcccc tgctagaata
      661 atccccatat ctgctttaaa tccttatcaa ggccgctggg ctatcaaggc tagagttact
      721 gccaagggag atatccgccg ataccataat gctaaaggtg atgggaaagt attctctttt
      781 gacttgcttg attctgatgg gggagagata cgggtgacat gcttcaatgc tcttcttgat
      841 cgattctatg aagttgtgga agttggtaag gtctatgtgg tatcaagagg aaacttgaga
      901 cctgcacaga agaactataa ccatcttaac aatgagtggg agattttatt ggagaatgga
      961 tcaactgtgg atctttgtcc tgatgagaac agttccattc ccacccagcg gtttgacttc
     1021 agaccgatca atgaaattga ggatgcccag aacaatgcta tccttgacat cataggtgtt
     1081 gttacatcgg tcaatccttg caccacaata cagaggaaaa atggcatgga aactcagaaa
     1141 agaactatga acctgaagga tatgtctggt cgaagtgttg aggtaaccat gtggggtgac
     1201 ttttgcaaca gagaaggctc acagcttcaa ggaatggttg aacgtgggat ctttcctgtg
     1261 ctggctgtca aagcaggaaa agtgagtgat ttcagtggca agtctgtcgg cacaatttct
     1321 tcaactcagc tcttcatcaa ccctgattct gctgaagctc atagtctcag gcaatggttt
     1381 gatagtggag gaagagatgc ttctactcag tccatatcca gagatatcac gcctggagca
     1441 tcaaggaatg agatccgaaa gacagtagca cagatcaagg atgaaggtct tggaatgggg
     1501 gacaaacctg actggattac ggtgaaagcc accgttatat tcttcaagaa tgagtccttc
     1561 ttctacacag cttgccctaa catgattggc gacaggcagt gcaataagaa ggtgacaaag
     1621 agtactaatg gcaattggac ctgtgacaaa tgcgataggg agtttgaaga gtgcgactac
     1681 aggtatctcc tgcagtttca gattcaagat cactcgggaa cagcttgggt gacagcattc
     1741 caggaggctg ggcaggagtt gcttggctgc tcggcaacag agctcaacgc acttaaggag
     1801 cgcgaggacc ctcggtttgc agacaccatg ctcaattgct tgtttcagga atatctgctc
     1861 aggctgaagg tcaaagaaga atcatacggc gatgagcgca aagtgaagaa caccgcggtc
     1921 aaagtggaga aggttgatcc ttcgggtgaa agtaaatttc tgctggattt gatctccaag
     1981 tcctcggcgc tacattagca gactgtgcta ctctatcagc tgctcgctcg tgcgtggtga
     2041 ggtgagcgag gtgaggtgtt gcagtgccca tagccctcgc cctcctgctc gatttttgtg
     2101 ccggtacttt aatattaacg ccacttaata gtttatatcc agattagtgc tttaatagtt
     2161 tatatccaga ttagtgctga tatttccatt tttgtgccgg tactttaata ttaacgccac
     2221 ttaatgtatc agcttttata cctttttctc gacc
//