LOCUS AK101212 2254 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033031B02, full insert sequence. ACCESSION AK101212 VERSION AK101212.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2254) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2254 /clone="J033031B02" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 28..1998 /db_xref="Osa1:LOC_Os02g53680" /note="(Rice Genome Annotation Project) replication protein A 70 kDa DNA-binding subunit, putative, expressed" /note="mapping to R02-TIGRv4S1-001465R (Chr.2: short arm=32827090, long arm=32830404, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG94958.1" /translation="MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGE RFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLE VLVSECEIIGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLF QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALN PYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEV VEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPI NEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDF CNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQW FDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKN ESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTA WVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDER KVKNTAVKVEKVDPSGESKFLLDLISKSSALH" BASE COUNT 593 a 512 c 595 g 554 t ORIGIN 1 ggaggtggag gagggcggcg ggtggcgatg gcgatggcga ggctgacgcc gaacggcgtg 61 gcggcggcgc tggcggggga cacgaacctg aagccggtgc tgcagatcgt cgagctgcgg 121 ggcgtccagg tcaacggcgc gggcgtcacg cgcggggaga ggttccgggc ggtggtctcc 181 gacggcaccg ccgcgtcctc cgcgctcttc gccgcgcagc tcagcgacca cgcccgatcc 241 ggcgccctcc gacgcggcag cattgtgcag ctcagcgagt acgtcatcaa cgaagtcggc 301 cccagaagga ttattgtcat tctgaacctg gaagttcttg tttcggagtg tgagataatt 361 gggaatccta cagcgctttc agaaactgga tctcctatcc caaatccgac aagagtagag 421 caatttaacg gagcacctca atatggtttg atggcaggga actcatcaaa tacaaccaca 481 aagcctagtg acaatgttcc attgttccaa aattcgatgg caggaaactc ctctaacttt 541 gccactaggc ccagtgacaa agttccggtc ttccaaccaa cagtccagcc atcttatcgc 601 cctgcaccta attacaaaaa ccatggagca atcatgaaaa atgaagcccc tgctagaata 661 atccccatat ctgctttaaa tccttatcaa ggccgctggg ctatcaaggc tagagttact 721 gccaagggag atatccgccg ataccataat gctaaaggtg atgggaaagt attctctttt 781 gacttgcttg attctgatgg gggagagata cgggtgacat gcttcaatgc tcttcttgat 841 cgattctatg aagttgtgga agttggtaag gtctatgtgg tatcaagagg aaacttgaga 901 cctgcacaga agaactataa ccatcttaac aatgagtggg agattttatt ggagaatgga 961 tcaactgtgg atctttgtcc tgatgagaac agttccattc ccacccagcg gtttgacttc 1021 agaccgatca atgaaattga ggatgcccag aacaatgcta tccttgacat cataggtgtt 1081 gttacatcgg tcaatccttg caccacaata cagaggaaaa atggcatgga aactcagaaa 1141 agaactatga acctgaagga tatgtctggt cgaagtgttg aggtaaccat gtggggtgac 1201 ttttgcaaca gagaaggctc acagcttcaa ggaatggttg aacgtgggat ctttcctgtg 1261 ctggctgtca aagcaggaaa agtgagtgat ttcagtggca agtctgtcgg cacaatttct 1321 tcaactcagc tcttcatcaa ccctgattct gctgaagctc atagtctcag gcaatggttt 1381 gatagtggag gaagagatgc ttctactcag tccatatcca gagatatcac gcctggagca 1441 tcaaggaatg agatccgaaa gacagtagca cagatcaagg atgaaggtct tggaatgggg 1501 gacaaacctg actggattac ggtgaaagcc accgttatat tcttcaagaa tgagtccttc 1561 ttctacacag cttgccctaa catgattggc gacaggcagt gcaataagaa ggtgacaaag 1621 agtactaatg gcaattggac ctgtgacaaa tgcgataggg agtttgaaga gtgcgactac 1681 aggtatctcc tgcagtttca gattcaagat cactcgggaa cagcttgggt gacagcattc 1741 caggaggctg ggcaggagtt gcttggctgc tcggcaacag agctcaacgc acttaaggag 1801 cgcgaggacc ctcggtttgc agacaccatg ctcaattgct tgtttcagga atatctgctc 1861 aggctgaagg tcaaagaaga atcatacggc gatgagcgca aagtgaagaa caccgcggtc 1921 aaagtggaga aggttgatcc ttcgggtgaa agtaaatttc tgctggattt gatctccaag 1981 tcctcggcgc tacattagca gactgtgcta ctctatcagc tgctcgctcg tgcgtggtga 2041 ggtgagcgag gtgaggtgtt gcagtgccca tagccctcgc cctcctgctc gatttttgtg 2101 ccggtacttt aatattaacg ccacttaata gtttatatcc agattagtgc tttaatagtt 2161 tatatccaga ttagtgctga tatttccatt tttgtgccgg tactttaata ttaacgccac 2221 ttaatgtatc agcttttata cctttttctc gacc //