LOCUS AK100802 2509 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023121K14, full insert
sequence.
ACCESSION AK100802
VERSION AK100802.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2509)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2509
/clone="J023121K14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 179..2059
/db_xref="Osa1:LOC_Os11g12740"
/db_xref="RAP-DB:Os11g0235200"
/note="(RAP Annotation release2) TGF-beta receptor, type
I/II extracellular region family protein"
/note="(Rice Genome Annotation Project) peptide
transporter PTR2, putative, expressed"
/note="mapping to R11-TIGRv4S1-000314R (Chr.11: short
arm=7188690, long arm=7193947, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG94772.1"
/translation="MDVESRQGPKGGDTMAASEVSVDWRGRPCGSRKHGGMKAAVFVL
GIQAFEMMAIAAVGNNLITYVFNEMHYPLSKSANIVTNFIGTVFLLSLLGGFLSDSYL
GSFWTMLIFGFVELSGFILLAVQAHLPQLRPPACDMMAAAAAEGGCEEASGVKAGIFF
AALYLVALGSGCLKPNIIAHGADQFRRGGGGGGDGDGDDGGDGKRLSSYFNAAYFSFC
VGELVALTVLVWVQTRSGMDVGFGVSAAAMAVGLVSLVAGVFFYRNKPPQGSIFMPIA
KVFVAAVTKRKQVCPSSSSTTAASHAVIPATGAAPVHRINKFRFLDKACVKVQDGHGG
GGDGGKESVWPPCTPAEVEQVKVLLCVVPIFACTIVFNTILAQLQTFSVQQGSAMDTR
IGGGGGGAAFHIPPASLQAIPYLVLIALVPAYEACFVPAMRRATGVDTGITPLQRIGV
GLFAVTFSMVAAALVEAHRRRHAGDGLLSIFWIAPQFLVFGVSEMFTAVGLIEFFYKQ
SLSGMQAFLTSMTYCSYSFGFYLSSLLVSLVNKVTSGDGAGAGGGGWLSDNDLNKDRL
DLFYWLLAGLSLLNFFNYLFWSRWYSKSVETTVQVAGVGGEGGGGEQQEEKGVDEVNM
GH"
BASE COUNT 479 a 709 c 776 g 545 t
ORIGIN
1 ggcctgacca cacaagcaca aagcaagcac tatcaccaaa aggatcagag aagaaactga
61 tatcactatc tgatcagtgt agcattgcag cctctcttct tggtaggagt gagctagcac
121 agtgaagagc taattaagcc atttgtgtga gcttgcgttg agtgagctct gagctaatat
181 ggatgttgag tcaaggcaag gccccaaggg tggtgacacc atggctgcct ccgaggtctc
241 cgtggactgg aggggcaggc cttgcggctc tcgcaagcat ggcggcatga aagcggccgt
301 ctttgtgcta gggatccagg cgttcgagat gatggcgatc gcggcggtgg ggaacaacct
361 gatcacctac gtcttcaacg agatgcacta cccgctgtca aagtcggcca acatcgtgac
421 caacttcatt ggcaccgtct tcctcctctc cctcctcggt ggcttcctct ccgactccta
481 cctcggaagc ttctggacca tgctcatctt cggcttcgtc gagctctccg ggttcatact
541 gctggccgtg caggcgcacc tgccgcagct gcggccgccg gcgtgcgaca tgatggcggc
601 ggcggcggcg gaggggggat gcgaggaggc gagcggggtg aaggcgggga tcttcttcgc
661 ggcgctgtac ctggtggcgc tggggagcgg gtgcctcaag cccaacatca tcgcgcacgg
721 cgccgaccag ttccggcgcg gcggcggcgg cggcggcgac ggcgatggcg acgatggcgg
781 cgacgggaag cggctgtcga gctacttcaa cgcggcctac ttcagcttct gcgtggggga
841 gctggtggcg ctgacggtgc tggtgtgggt gcagacgagg tcggggatgg acgtggggtt
901 cggggtgtcg gcggccgcca tggccgtggg gctggtcagc ctcgtcgccg gcgtcttctt
961 ctaccggaac aagccgccgc agggcagcat cttcatgccc atcgccaagg ttttcgtcgc
1021 ggcggtaacc aagaggaaac aagtgtgccc atcatcatcg tcgacgacag ccgcctcgca
1081 tgctgtgatc cccgccaccg gtgccgcccc tgtccaccgc atcaacaaat tcaggttctt
1141 ggacaaggcg tgcgtgaagg ttcaggacgg ccatggcggc ggcggcgacg gggggaagga
1201 gagcgtgtgg ccgccgtgca cgccggcgga ggtggagcag gtgaaggtgc tactgtgcgt
1261 ggtgcccatc ttcgcgtgca ccatcgtctt caacaccatc ctggcgcagc tgcagacgtt
1321 ctccgtgcag cagggctccg ccatggacac ccgcatcggc ggcggcggcg gcggcgccgc
1381 cttccacatc ccgccggcgt cgctgcaggc catcccctac ctcgtcctca tcgcgctggt
1441 gccggcgtac gaggcgtgct tcgtgccggc catgcgccgc gccacgggcg tggacaccgg
1501 catcaccccg ctccagcgga tcggggtcgg cctcttcgcc gtcaccttct ccatggtcgc
1561 cgccgcgctc gtcgaggcac accgccgccg ccacgccggc gacgggctcc tctccatctt
1621 ctggatcgcg ccgcagttcc tggtgttcgg cgtgtccgag atgttcaccg ccgtggggct
1681 catcgagttc ttctacaagc agtcgctctc cggcatgcag gccttcctca cctcaatgac
1741 ctactgctcc tactccttcg gcttctacct cagctccctc ctcgtctcgc tcgtcaacaa
1801 ggtcacctcg ggcgacggcg ccggcgccgg cggcggcggc tggctcagcg acaacgacct
1861 caacaaggac aggctcgacc tcttctactg gctcctcgcc gggctcagcc tcctcaactt
1921 cttcaactac ctcttctggt cgaggtggta ctccaagagt gtggagacga ccgtgcaggt
1981 cgccggagtt ggaggagaag gcggcggcgg cgagcagcag gaggagaagg gtgttgacga
2041 ggtcaacatg ggtcactgac atgtgggttc gaaccgcacg tctagtatgt taggtggatt
2101 attaatcatt taacctagtc ttaacctttt ttttatggtt tttccttgta tggaaaaata
2161 ttagtaaggg tggatgtata tgagtcccca cctaattaag gagagtgtgt gtgatgtata
2221 aattaattaa tcaaaaggga ttaggtgatt attacttagt aatgatccct gattaggtca
2281 agtcaaaagg tagtagttct gagtttgact ctgcaaggat gcaagagtag tggtatttgg
2341 gtagggatca agtgatcaag tacgtatcta gtccttttct ttaatgataa ggagctagta
2401 tatatctatg tactttatat atgtagctat catgtaaatg acaaaaggat ttgccataaa
2461 agcaaagtac tgataatagt tggtgcaaaa aatactttca ctgttgatc
//