LOCUS AK100770 1991 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023119N23, full insert
sequence.
ACCESSION AK100770
VERSION AK100770.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1991)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1991
/clone="J023119N23"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 113..1273
/db_xref="Osa1:LOC_Os01g09620"
/db_xref="RAP-DB:Os01g0192000"
/note="(RAP Annotation release2) Similar to Zinc finger
transcription factor"
/note="(Rice Genome Annotation Project) nucleic acid
binding protein, putative, expressed"
/note="mapping to R01-TIGRv4S1-000301R (Chr.1: short
arm=4945934, long arm=4947925, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG94757.1"
/translation="MMMMGEGVSSVPPWSHLPVSGVDVLGGGGGGGDEMTPYVIAALR
DYLPANDVGVGADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAH
PGEKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDG
TACRRRVCFFAHTPDQLRVLPAQQSSPRSVASSPLAESYDGSPLRRQAFESYLTKTIM
SSSPTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVK
SSPSGGWSYPSSSAVYGSPKAATGLYSLPTTPLASTATVTTASSFMPNLEPLDLGLIG
DEEPVQRVESGRALREKVFERLSRDGAISGDATAFATAGVGLDVDWVSDLIN"
BASE COUNT 381 a 586 c 597 g 427 t
ORIGIN
1 ggccttacac atcgcaccac tctctcttac tcgtccatac gccgagtcca cgagatctcg
61 ccgtagtcca tacaccggtt gatcggaggt cgtgttgccg ccgacggtgg ccatgatgat
121 gatgggggaa ggagtcagca gcgtcccgcc gtggtctcac ctccccgtga gcggagtcga
181 tgtactcggc ggcggtggtg gcggtgggga tgagatgacg ccgtacgtga tcgccgcgct
241 gcgggattac ctgccggcga atgatgtcgg ggtgggggct gacgaggagg aggaggccgc
301 ggcgatggcc gcggcggtgg acgcgtacgc gtgcgacgag ttccggatgt acgagttcaa
361 ggtgcggcgg tgcgcgcgcg ggcggagcca tgactggacc gagtgcccct tcgcgcaccc
421 gggggagaag gcgcgccgcc gcgatccgcg caagtaccac tactccggca ccgcgtgccc
481 ggacttccgc aagggcgggt gcaagcgcgg cgacgcctgc gagtacgccc acggcgtgtt
541 tgagtgttgg ctccacccgg cgcgctaccg cacccagccg tgcaaggacg gcaccgcctg
601 ccgccgccgc gtctgcttct tcgcccacac cccggaccag ctccgcgtcc tcccggcgca
661 gcagtccagc cccaggagcg tggcgtcctc gccgctggcc gagtcctacg acggctcgcc
721 gctgcgccgc caggcgttcg agagctacct caccaagacc atcatgtcct cgtccccgac
781 cagcaccctc atgtctccgc ccaagtcgcc cccgtcggag tccccgccat tgtcgcccga
841 cggtgccgcg gccatccgtc gcggatcttg gcccggcgtc ggctcgccgg tgaacgacgt
901 cctggcctcg ttccgccagc tccgcctcaa caaggtgaag tcgtcgccgt ccggcgggtg
961 gagctaccct tcgtcgtccg ccgtctacgg gtctcccaag gccgccaccg gcctctacag
1021 cctccccacc actccactgg cttccacggc aacggtgacc accgcctcca gcttcatgcc
1081 caacctggag ccactggacc tcgggctcat cggcgacgag gagccggtcc agagggtgga
1141 gtccggaaga gccctccggg agaaggtgtt cgagcgactg agccgggatg gtgccatctc
1201 cggcgacgcc acagccttcg ccaccgccgg tgttggcctc gacgttgatt gggtgtccga
1261 cctcatcaac tgaggcttcc aagtcgctat tggaagcccc ttttgtgagc atcaaggatg
1321 atggcatgga ggaggagaag gtggcggtaa gaagaaaatg atggcacgac aaaaaaatcc
1381 ttcattttct tttgtgattt caagtcaagt ttctactaat tcctgtacat atctatctcc
1441 catgtgaata ttcatggttg gtggagagga ggcaagtatg gaaagatggg tggatttgtt
1501 ttggggtttt gaggtagtag caaaattacc cacaaaaaaa ttaggtgaaa aaaaaaagag
1561 gagtagaaat ggaggtgatt cagtgtctcc tgtgtgcata gggtgtgtgg aggtgaagga
1621 agcacggaag gaagaagatc atggcggaag aagatggccg gatttcggcc gccgtcgcgg
1681 cggcggccct gcctatttca gtgatttctg ggggtttatc ctctgttcat cgtttgttgc
1741 atcatcgact agctgatgaa gatcgtcgat cgatttcaat caagcccccc ctcttgttga
1801 tttcctattt tgttgatgta atctttgttt tgttaagaac ccccaacagc atattttgta
1861 ccttagctta aatctgaaaa tcttttgctg actcatctac ctatatgtgg tgatgaagcc
1921 cccctcaatg tattgtaatc acctgcttca agtaaatgat ccaataatat tatgttgcta
1981 tatgtttcat t
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