LOCUS       AK100454                2669 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023091D11, full insert
            sequence.
ACCESSION   AK100454
VERSION     AK100454.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2669
                     /clone="J023091D11"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..2669
                     /db_xref="Osa1:LOC_Os04g55230"
                     /note="(Rice Genome Annotation Project) ataxin-2
                     C-terminal region family protein, expressed"
                     /note="mapping to R04-TIGRv4S1-001118F (Chr.4: short
                     arm=32624554, long arm=32629216, direction=forward) for
                     TIGR Pseudomol ver4"
BASE COUNT          867 a          570 c          613 g          619 t
ORIGIN      
        1 agatggcttt ggataaagga aaacttgatg atgccgtcaa cttcggaaca aaggcgttgt
       61 ccaaaattgt agcagtttgt ggtccatacc atcggctgac tgctaatgcg tacagtcttc
      121 ttgctgtagt tctttaccat actggagatt ttaatcaggc aactatatat cagcagaagg
      181 cacttgatat caatgaaaga gagctaggtc ttgaccaccc agaaactatg aagagttacg
      241 gggatttatc tgtcttctac taccgtctcc agcacatcga aatggctcta aagtatgtca
      301 accgtgcact atatctactc caattttctt gtgggctttc acatccaaat tcagctgcca
      361 catacataaa tgtggctatg atggaagaag gtatgggaaa tgttcatgtc gctctcaggt
      421 acttgcatga agcactgaag tgcaacaaga gactgctagg agctgatcac attcagactg
      481 ctgcgagcta tcatgccata gccatagccc tctcaatgat ggatgcatac tccttgagtg
      541 ttcagcatga acagaccacc ttacagatac ttcaggagaa actaggacaa gatgaccttc
      601 gaactcagga tgctgctgca tggcttgagt attttgagtc aaaagcatta gaacaacaag
      661 aggccgcccg aaggggcatc ccaaaacctg actcatctat tgcaagcaaa ggacatctta
      721 gtgtatcaga tctacttgac tacataagcc cggatcagga aagaaaagag agggatacac
      781 aaagaaaggg caggcgtgca aagaataata tcagagccca tcaaggtgaa ttagttgaag
      841 aaaaggagag ctttgagcac gacataggat ctcctcatga agcaaacaaa gaggagtttc
      901 aacaagtaaa atcgaaggca caccctccag caatatcaga agaaaattat gctatccatg
      961 atgagctgaa gcaagttgat cctttatcac ctgaagaata ttctgatgaa gggtggcaag
     1021 cagctaattt gcgtggacga tctgcaaatg tacggaagaa aagcagtcgc agaaggcccg
     1081 ctctcactaa attaatggtt gatcgcttgg aagatggccg cacaggttct gcttataggg
     1141 ctggtgtaca acaacacatg aaaggagata aagaagatgt tataaactct tctagccagc
     1201 tctcctttgg cagctttcta aaaactgaca aggtgaatgg gaattccagc aatattgaaa
     1261 ataaggtttt caatgctata tctaaaccag aacgaggcat aaagctttca ggaattaaca
     1321 gacctgctac tatagcttcc aagttggtat catacaaaga tgtagcagtg tcaccccctg
     1381 gcacagtctt gaaaccgatt ttggagcaga aggaagcaaa ggagaaggat aatgcacaaa
     1441 atactgatct aatagtgtca tctgaggagg aagataagaa gttaacagat gaagatgaag
     1501 aaaaggaaaa gccaagtcat gacagcagca aagaggttct ttcaagtgaa ccagaggaaa
     1561 tcggcaatga tgaaaaagct ccggacagca acagtgatga aagcccaact gaatctaaga
     1621 aaaaaggtgg aagcaagctt tcagcttcag cgcctccatt caatcctgga tcactcttat
     1681 cgatgtcgca cccttacagt acagtggcaa tatatgatgc tagcgtcgtt cttcagccaa
     1741 taccaagtca accaatggag attctccctc acgccattga tactagggta ccccgtggtc
     1801 ctcggtccac attgtactac cgtactgggc ataccttcca aagaaaacag ggttacgcac
     1861 acagccagag caccattctg aggggtagca actccccccc aaccatgaat cctcatgctg
     1921 ccgagtttgt gcctggaaaa acttcgcaac aacctgatgt ggctaacaga gagcctagtg
     1981 cagatgtttc tgtaactgat tcagcagatc aactgttggc accacagaca tcagatgaag
     2041 taaaggctgg tatgcctgca gcagaacaag caattcaagg tgagagcacc agcccatgca
     2101 aaggaaagga aaacagagcg aaagatgcct tgagaaactc atgcaaaaca gagctggcaa
     2161 ggcagatttt gttcagtttc atcgtcaagt cagtacatga tagcttaggt tccactggag
     2221 ctgaatcgga cagaaaacca agtggaccag acgaatctgg taatgcacag agcagcaaca
     2281 acataaacaa gagtccgtca ggtcgcaaag agcttgacaa acagcagaag gccaccgtgg
     2341 tacctaagag tgagaaggat acagaaggat ttacagtagt ttcaaaacgt agaagaagca
     2401 agcagcactt tgtgcatccc atacatggtc tctattccca gcagtcaatt tgcacttctg
     2461 tcagctaaag gtcccggtag atctcttttt gggagtcgcc atattttgga agaaaggtat
     2521 cgcttaatta cttagcttag acgcttggta gcaaaagtct taccctatcc agatgatcga
     2581 gagcatgtag tgaaactgta caaagctttc cgcaatgtct tttgtgtaat aaattttgta
     2641 attttggggt agcagccgca tcagcgctg
//