LOCUS AK100454 2669 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023091D11, full insert sequence. ACCESSION AK100454 VERSION AK100454.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2669) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2669 /clone="J023091D11" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2669 /db_xref="Osa1:LOC_Os04g55230" /note="(Rice Genome Annotation Project) ataxin-2 C-terminal region family protein, expressed" /note="mapping to R04-TIGRv4S1-001118F (Chr.4: short arm=32624554, long arm=32629216, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 867 a 570 c 613 g 619 t ORIGIN 1 agatggcttt ggataaagga aaacttgatg atgccgtcaa cttcggaaca aaggcgttgt 61 ccaaaattgt agcagtttgt ggtccatacc atcggctgac tgctaatgcg tacagtcttc 121 ttgctgtagt tctttaccat actggagatt ttaatcaggc aactatatat cagcagaagg 181 cacttgatat caatgaaaga gagctaggtc ttgaccaccc agaaactatg aagagttacg 241 gggatttatc tgtcttctac taccgtctcc agcacatcga aatggctcta aagtatgtca 301 accgtgcact atatctactc caattttctt gtgggctttc acatccaaat tcagctgcca 361 catacataaa tgtggctatg atggaagaag gtatgggaaa tgttcatgtc gctctcaggt 421 acttgcatga agcactgaag tgcaacaaga gactgctagg agctgatcac attcagactg 481 ctgcgagcta tcatgccata gccatagccc tctcaatgat ggatgcatac tccttgagtg 541 ttcagcatga acagaccacc ttacagatac ttcaggagaa actaggacaa gatgaccttc 601 gaactcagga tgctgctgca tggcttgagt attttgagtc aaaagcatta gaacaacaag 661 aggccgcccg aaggggcatc ccaaaacctg actcatctat tgcaagcaaa ggacatctta 721 gtgtatcaga tctacttgac tacataagcc cggatcagga aagaaaagag agggatacac 781 aaagaaaggg caggcgtgca aagaataata tcagagccca tcaaggtgaa ttagttgaag 841 aaaaggagag ctttgagcac gacataggat ctcctcatga agcaaacaaa gaggagtttc 901 aacaagtaaa atcgaaggca caccctccag caatatcaga agaaaattat gctatccatg 961 atgagctgaa gcaagttgat cctttatcac ctgaagaata ttctgatgaa gggtggcaag 1021 cagctaattt gcgtggacga tctgcaaatg tacggaagaa aagcagtcgc agaaggcccg 1081 ctctcactaa attaatggtt gatcgcttgg aagatggccg cacaggttct gcttataggg 1141 ctggtgtaca acaacacatg aaaggagata aagaagatgt tataaactct tctagccagc 1201 tctcctttgg cagctttcta aaaactgaca aggtgaatgg gaattccagc aatattgaaa 1261 ataaggtttt caatgctata tctaaaccag aacgaggcat aaagctttca ggaattaaca 1321 gacctgctac tatagcttcc aagttggtat catacaaaga tgtagcagtg tcaccccctg 1381 gcacagtctt gaaaccgatt ttggagcaga aggaagcaaa ggagaaggat aatgcacaaa 1441 atactgatct aatagtgtca tctgaggagg aagataagaa gttaacagat gaagatgaag 1501 aaaaggaaaa gccaagtcat gacagcagca aagaggttct ttcaagtgaa ccagaggaaa 1561 tcggcaatga tgaaaaagct ccggacagca acagtgatga aagcccaact gaatctaaga 1621 aaaaaggtgg aagcaagctt tcagcttcag cgcctccatt caatcctgga tcactcttat 1681 cgatgtcgca cccttacagt acagtggcaa tatatgatgc tagcgtcgtt cttcagccaa 1741 taccaagtca accaatggag attctccctc acgccattga tactagggta ccccgtggtc 1801 ctcggtccac attgtactac cgtactgggc ataccttcca aagaaaacag ggttacgcac 1861 acagccagag caccattctg aggggtagca actccccccc aaccatgaat cctcatgctg 1921 ccgagtttgt gcctggaaaa acttcgcaac aacctgatgt ggctaacaga gagcctagtg 1981 cagatgtttc tgtaactgat tcagcagatc aactgttggc accacagaca tcagatgaag 2041 taaaggctgg tatgcctgca gcagaacaag caattcaagg tgagagcacc agcccatgca 2101 aaggaaagga aaacagagcg aaagatgcct tgagaaactc atgcaaaaca gagctggcaa 2161 ggcagatttt gttcagtttc atcgtcaagt cagtacatga tagcttaggt tccactggag 2221 ctgaatcgga cagaaaacca agtggaccag acgaatctgg taatgcacag agcagcaaca 2281 acataaacaa gagtccgtca ggtcgcaaag agcttgacaa acagcagaag gccaccgtgg 2341 tacctaagag tgagaaggat acagaaggat ttacagtagt ttcaaaacgt agaagaagca 2401 agcagcactt tgtgcatccc atacatggtc tctattccca gcagtcaatt tgcacttctg 2461 tcagctaaag gtcccggtag atctcttttt gggagtcgcc atattttgga agaaaggtat 2521 cgcttaatta cttagcttag acgcttggta gcaaaagtct taccctatcc agatgatcga 2581 gagcatgtag tgaaactgta caaagctttc cgcaatgtct tttgtgtaat aaattttgta 2641 attttggggt agcagccgca tcagcgctg //