LOCUS AK100389 2415 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023085N24, full insert
sequence.
ACCESSION AK100389
VERSION AK100389.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2415)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2415
/clone="J023085N24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2415
/db_xref="Osa1:LOC_Os05g49140"
/db_xref="RAP-DB:Os05g0566400"
/note="(RAP Annotation release2) Similar to Blast and
wounding induced mitogen-activated protein kinase"
/note="(Rice Genome Annotation Project) OsMPK20-5 -
putative MAPK based on amino acid sequence homology,
expressed"
/note="mapping to R05-TIGRv4S1-001073R (Chr.5: short
arm=28105556, long arm=28110736, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 689 a 499 c 591 g 636 t
ORIGIN
1 gactcggctc ggctgcttct tcttctcctt ctcctcatcc tccacatcgc tgcggattcg
61 agcggcgagg cttggatttt ctcccggcga gatctccccg gcggccgtct cgcgatgcct
121 gaggcaaatg cgggtgggcg ggcggcgccg gcggcggagc agcggagcaa gaacacaaca
181 gagatggatt tcttcagtga atatggtgac tccagccgat acaaaattca agaaatcgtt
241 ggtaaaggaa gttatggagt tgtttgttca gctattgacc aacataccgg tgacaaagta
301 gcaatcaaga aaatacacaa tatctttgag catctatctg atgctgctag gatcctccgt
361 gagatcaaac ttctccggct tttacggcat cctgatattg tcgagatcaa acatataatg
421 ttacctccat ctagaaggga cttcaaagat atttatgttg tcttcgaact gatggataca
481 gacctccacc aggttattaa ggctaatgat gacttaacga aggaacatca tcagttcttt
541 ctgtatcaat gcttcgagca ttgaaatata tccatactgc taatgtttat catcgtgatt
601 taaagcccaa aaatatatta gcaaatgcta actgtaagct caagatatgt gattttggac
661 tagcaagagt tgcatttaat gacactccta caacagtttt ctggacggac tacgttgcaa
721 ctagatggta cagggctcct gagctgtgtg ggtctttctt ttctaagtat tcaccagcta
781 tagatacatg gagtattggt tgcatttttg cggagatttt gactggaaaa cctttgttcc
841 ctggtaaaaa tgtggttcat caattggact tgatgactga tctcttgggt acaccatcaa
901 tggatgctat ttcaaggatt cggaatgaca aggcaaggag gtatctgagc agcatgagga
961 ggaagcagcc agtacctttt ttcagaaaag ttcccaaatg tagatccttt ggcactcaag
1021 ctcttacaaa ggcttctagc atttgatccg aaggatcgac ctactgcaga agaggcgttg
1081 gctgatccat attttaaagg ccttgcaaaa gtggagagag aaccatcatg ccaaccaatt
1141 tcaaaaatgg agtttgagtt tgagcgaaga aaggttacca aagatgatat caaggaactt
1201 atattccgtg agatattaga gtatcatcct cagcttctga aggattacat gaatggctcc
1261 gaaaacacga gctttctata tccaagtgct gttgataatt tccggaggca atttgccatc
1321 ttagaggaaa acggaggaaa gagtggtgca ctagatagga agcatgtttc tcttccaagg
1381 gctacaacag ttcactctac atcaattcct ccaaatgaag gcctagatgc aacatcccaa
1441 gttactcaaa ggatcccaac agctagacca ggaagaacgg ttggtccggt attaccattc
1501 gagaatccag gcgccgcaga tccgcacagc gcacggaggg tggtgaggaa tccgatggtt
1561 cctccagcag ctgccaacaa gtcaggatac agctacaacc taaagtcaga ctactctgat
1621 aggcaacatc aggaagagct tgagaaagat cgtgtgcagt acaggcctgc acaacacttg
1681 atggatgcta aagttgctcc agatacagcc ccggacatac ggtcttcaca atactacttt
1741 acgaggagtg ctcccagaac tgatctaaca gacagggctg cactccaggg gagcatgcta
1801 tacggcattg ctccgttcaa cggcatcgca gcagttgctg gtggatacag caaggttggt
1861 gccgttcaat atggtgtttc aaggatgtac tagagtttta gtcaggcagt tgtggaattg
1921 ctccatagat gagcaagatg ggaatgccgg agcatggctt tgtgttgtgc ccatccaccc
1981 agatataagg ctggcaaggg aattggtcgc atctggtcat ggatgcaggc gaaggttgaa
2041 gaaaggagaa gggaaactcc tattccatct caggcggcca ttgtccattt gaaatggcag
2101 tgagctcgcg atggtgaaag aggaaaagag ggagagaaag ttcatggtgg aatttctcgc
2161 actttatttg ttgtggagaa aaggagaaaa tgtgaataac agcactaggc tgggcttgtg
2221 tacatacctg caacccttga tttttttttc ttgttttctt gctagaagct gttgcttctt
2281 gtgtaaacct gcaaaagcat actccgaaaa tgaatcattc gccaaaaaat tgagacggcg
2341 gattatttgg tagaatgtta tgctagctat ccaaagttta atcttgttga aatgaggaag
2401 caaaatatgc tagtg
//