LOCUS AK100222 1809 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023047G10, full insert
sequence.
ACCESSION AK100222
VERSION AK100222.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1809)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1809
/clone="J023047G10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1809
/db_xref="Osa1:LOC_Os07g06620"
/note="(Rice Genome Annotation Project) protein YABBY,
putative, expressed"
/note="mapping to R07-TIGRv4S1-000146F (Chr.7: short
arm=3220076, long arm=3227537, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 522 a 372 c 347 g 568 t
ORIGIN
1 gttacatatc tctcccttgc ttgctttgct cctggatata tagctagctt ctttctttct
61 tcctctctcc ctgtgtggca cgcgcctcca atcgatctct tcggtgagta gacgcatcga
121 gatcgggggg aaatgtcggt ccagtttaca tcggagcatg tttgctatgt caactgcaac
181 tattgcaaca ctatccttgt ggtgaatgtg ccaaacaatt gttcctacaa cattgtgact
241 gttagatgtg ggcattgcac aatggtgctc tccatggatc ttgctccttt tcaccaagca
301 cgcactgttc aagatcacca ggtttaaaaa ctgaaataat ggtttgaaat ttcagttcaa
361 aactgtagcc gaagaatctc ttgcatatat atcagctata tcttattttt tatgaaacaa
421 aacaaatgaa atattaattt ctgtacgtat gtaaaaaaaa gaattaatat taattattta
481 ctacgtacag tggaatggtc acatctaaat ttgtttattt aggtacagaa cagaggattt
541 caaggtaata actttggaag ctatgacata gcttccagaa atcagaggac atcgacagcc
601 atgtacccaa tgccaaccag tcagcagcaa gtgtcaccta tacgtcgtat gcacaattaa
661 ttttctcatg attttatttc attgatctac taaattatgg ggtttatttt ttatttctct
721 atataagcat gcatgcaaaa tgggtatata taatatagtt aaaggttata tttactgttc
781 taggcttcta atgtataatc aaaatatatt atagtaatca agttcatgca tgagctatat
841 atgaacctga tcacactgaa ttccagtaaa cattagtttt ttccccgtat acgcatggag
901 ctgtgttaga tttcccaaat gatcaatcta taggtattaa cacacacaca cacacacaca
961 cacacataca tacacacaca cacaatacat atattatcag cttgcataat ttattaaatt
1021 gccttgttct tctgtattca cattatagct agttttatgt attatatata tgcttgtata
1081 atagatttaa aatattggtc cttttttctt ctttacagcc cctgagaaaa gacagcgtgt
1141 cccatctgca tacaacagat tcatcaagga ggagatacag aggattaaaa ccagcaatcc
1201 tgagattagc cacagggagg cattcagtgc tgctgcaaag aactgggctc atcttccccg
1261 gctccatttg gcctcagcgt cgccgacggc ggcggcggcg gcggcagcaa ctaatcgcgg
1321 cggcgcggcc tgccggccgg ccaccgatcg ccggcgtgca cgccggcgcg cggcggcggc
1381 cggtcgagaa tgcgcgcgca ggagggacga cgacgatata ttattatcgc gtgtgcccct
1441 ctctcttcgc cgcgtaatta attaatcagt taattaatta cgtacgacct actgtgttat
1501 gctatcgatc cgtgttaatt aattacctac gtatcttgat taattagtct cgtattatac
1561 gtactattat acgtacgtgc tgtgctatgt acgtagacaa caaaaaaaaa tgtgcgtgat
1621 gagttctact acgtacgtac gtactgtgtt ctagtgtttt aatttgtatc cgaaccaagg
1681 agttgtttaa ttaactgcat gcacatgcac tggacttgaa tctggagtat tatgtaagtg
1741 tgcatgcatg ctggattatg caaaataaac gaattaatga atagaactgt ttttgttaat
1801 taattaatt
//