LOCUS AK100143 1577 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023011P12, full insert
sequence.
ACCESSION AK100143
VERSION AK100143.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1577)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1577
/clone="J023011P12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1577
/db_xref="Osa1:LOC_Os02g48720"
/note="(Rice Genome Annotation Project) ADP,ATP carrier
protein, mitochondrial precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-001257F (Chr.2: short
arm=29816108, long arm=29819252, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 351 a 376 c 411 g 439 t
ORIGIN
1 ggcccccacg acgctcgctc tctcctctct ctccctcttc cgccgccgcg cttggggaag
61 gaaggagaaa gcaagccatc ggcccccgcc tccgcctccg aagggacatt gttgctagtt
121 ggtgatggct gagcaggcta atcaaccgac tgtccttcag aagttcggtg gccagttcca
181 ccttggctcc agcttttctg aaggtgtacg ggctcgtaac atctgcccat ctgtctcatc
241 ctatgacagg cgctttacca caaggagcta catgacccag ggccttgtca atggtggcat
301 caacgtccca atgatgtcgt cctctccaat ttttgctaat gctccagctg agaaaggtgg
361 caaaaacttc atgattgatt tcctcatggg tggagtgtca gccgcagttt caaagactgc
421 tgctgctccg attgagcgtg tgaagctgct tatccagaac caggatgaaa tgatcaaggc
481 tggtaggctc tcagagccat acaagggtat tggggactgc ttcggacgca ctatcaagga
541 tgagggtttt gcttcattgt ggagaggaaa cactgccaat gtgatccgtt acttccccac
601 ccaggctttg aactttgctt tcaaggatta cttcaagagg ctgttcaact tcaagaaaga
661 caaggatggt tactggaagt ggtttggtgg caaccttgcc tctggtggtg ctgctggtgc
721 ttcatctctg ttttttgtgt actcccttga ctatgctagg acaaggttgg ccaatgatgc
781 gaaggctgcc aagggaggag gtgaaaggca gttcaatggc cttgtggatg tttaccgcaa
841 gactctcaag tcagatggca ttgctgggtt gtaccgtgga tttaacatct catgtgttga
901 aatcattgtc taccgtggtc tgtactttgg aatgtatgat tctctgaagc cagttgtact
961 cactgggtct ctccaggaca atttctttgc aagctttgcc cttgggtggc tgatcaccaa
1021 cggtgcaggt cttgcctctt accccattga taccgtccgc agaaggatga tgatgacctc
1081 tggagaggct gtcaagtaca agagctccat ggatgctttc tcccagatcc tgaagaacga
1141 gggtgccaag tcactgttca agggtgctgg tgccaacatc ctacgtgcca ttgctggtgc
1201 tggtgtgctc tcaggctatg accagctgca gatcctcttc tttggaaaga agtacggctc
1261 gggcggtgcc taaactggca gaaaatgatg acgaacaagt gtttattcct ggtcctgcac
1321 taacgggatc tggtgaattt tgccttttta acattgaaaa caataataat tcttgtaggg
1381 gagaacactc cccgacattc gttttttggt ggaagcgttt atctccaaac attgtcatag
1441 gcggaggcgt taatcgcaaa cagtttacca tcatagggtt gagtttgagt tgagtctggc
1501 cggctctgtt atgtctggcg attttcctac catacattac cctcggtgaa atatcgaaag
1561 attattgagt tgctgtc
//