LOCUS AK099874 1523 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013111G22, full insert sequence. ACCESSION AK099874 VERSION AK099874.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1523) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1523 /clone="J013111G22" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 73..1353 /db_xref="Osa1:LOC_Os08g29370" /db_xref="RAP-DB:Os08g0382400" /note="(RAP Annotation release2) Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein" /note="(Rice Genome Annotation Project) peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed" /note="mapping to R08-TIGRv4S1-000535F (Chr.8: short arm=17887238, long arm=17891028, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG94332.1" /translation="MAAALAFPTCCCCRRPSLRPSAGRRGRRPVARCALPSSENSFSW KEYAISVALSAGLITGAPTLGWPAHASPLEPVIPDVSVLISGPPIKDPGALLRYALPI DNKAVREVQKPLEDITDSLKIAGVRALDSVERNVRQASRALSNGRNLILGGLAESKRA NGEELLDKLAVGLDELQRIVEDRNRDAVAPKQKELLQYVGTVEEDMVDGFPYEVPEEY SSMPLLKGRATVDMKVKIKDNPNLEDCVFRIVLDGYNAPVTAGNFLDLVERKFYDGME IQRADGFVVQTGDPEGPAEGFIDPSTGKVRTIPLELMVDGDKAPVYGETLEELGRYKA QTKLPFNAFGTMAMARDEFDDNSASSQIFWLLKESELTPSNANILDGRYAVFGYVTEN EDYLADLKVGDVIESIQVVSGLDNLANPSYKIVG" BASE COUNT 402 a 334 c 358 g 429 t ORIGIN 1 gattttccca cctccacctc cacctccccc ttcccttctc gccaatctca cttcatcctc 61 ctcctcccat caatggcggc ggcgctcgcg ttccccacct gctgctgctg ccgccgcccc 121 tcgctgcgtc cttccgcggg tcgccgcggc cgtcgccccg tcgcccgctg cgcgctcccc 181 tcctccgaga attcatttag ctggaaagaa tatgcaattt ctgtagcatt atcggctgga 241 ttaatcactg gcgcaccaac gttaggatgg ccagcacatg cttctcctct tgaaccagtg 301 atcccagatg tttcagtttt gatctctgga cctcccatta aagatcctgg tgctttattg 361 agatatgctt tgccaataga taataaagct gttcgtgaag ttcaaaaacc actagaggat 421 atcactgaca gtcttaagat tgctggtgtt agagccttgg attcagttga aagaaatgta 481 agacaagcat cgagggcact gagtaatggg aggaacctaa ttcttggcgg tcttgctgaa 541 tccaaaagag caaatgggga ggaattattg gataaattgg ctgttggact tgatgagctt 601 caacggattg ttgaggacag aaacagggat gcagtagctc caaagcagaa agaacttctc 661 cagtatgttg gaactgtaga agaagatatg gtcgatggat tcccctatga agtgccagaa 721 gaatacagca gcatgcctct tctcaaagga agggctaccg tggacatgaa ggttaagatt 781 aaggacaatc ctaatttaga ggattgcgta tttcggattg ttctggatgg atacaatgct 841 cctgtgactg ctgggaactt cttagatctg gtggaacgga agttctatga tggcatggaa 901 attcaaagag ctgatggttt tgttgttcaa actggcgatc ctgagggacc agctgaggga 961 tttattgatc ccagtactgg taaagttcgt acaatacctc ttgagttaat ggtcgatggt 1021 gacaaagcgc ctgtatatgg tgaaacactt gaagaacttg gccgctacaa ggctcaaaca 1081 aagcttcctt ttaatgcatt tggaacaatg gcaatggcta gagatgaatt tgatgacaat 1141 tctgcttcta gccaaatctt ttggttgtta aaagagagtg agctaacacc aagcaatgcc 1201 aatatactgg atgggcggta tgccgtattt ggatatgtca ccgagaacga ggactacttg 1261 gcagacctca aggttgggga tgtcattgaa tcgattcaag ttgtctcagg cttagacaac 1321 ctcgccaacc caagctataa gattgtagga taaaatgttt ctttttttca ggagttcctt 1381 gataggcaat tattttacca tattgaaatc agtgtaaagt gctataatct ctaaccctca 1441 tctcatgacc ttctatgttt tgtgagtttt gcaatatgcg ggattcaata ttacttgaaa 1501 gtaaagacgt tcatcatttg tct //