LOCUS AK099778 2547 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013095J08, full insert
sequence.
ACCESSION AK099778
VERSION AK099778.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2547)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2547
/clone="J013095J08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2547
/db_xref="Osa1:LOC_Os07g38070"
/db_xref="RAP-DB:Os07g0568100"
/note="(RAP Annotation release2) Similar to Nodulation
receptor kinase precursor (EC 2.7.1.-) (Does not make
infections protein 2) (Symbiosis receptor-like kinase)
(MtSYMRK)"
/note="(Rice Genome Annotation Project) nodulation
receptor kinase precursor, putative, expressed"
/note="mapping to R07-TIGRv4S1-000758F (Chr.7: short
arm=22825252, long arm=22829828, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 635 a 621 c 642 g 649 t
ORIGIN
1 ggctccgggg ggagtcgccg cgccgaggaa tatccgctcg cgactcgcga ggatgatgac
61 gacacggaac gaaaagaagc ggggcgcgcg cgccgtcgct gtccgcggca gcgtcagccg
121 cctcgcctcg cctgccgagc accagcagac accgcgagaa agtacaaatc ggagtcggag
181 ctagcgccac ccaccccgct gtcgccgcgc tgaccccttc caccaccacc acccgcctcg
241 ccttccgccg gcagcggcag cggcagcgcc agcacgcggc ggcggctagc ggccggcccg
301 ctcctccaag acatggccgc ccgcttcggc cccctcctcc tcgtactccc cctctcctcc
361 gcgctgctcg tcctctccgc cgccacggcg ccccgtggcc gtcccagcca agtggatgtg
421 gggaggcagc tgagggagga gttgtgggag agaaaccaag ggcacgagat gctcaggtcg
481 tggcgcgacg gtgacccgtg ctcgccgtct ccatgggaag ggttctcttg ccgatggaag
541 gacggcaacc tcttcgttgt caagctgaac ttttcttcaa agaaactgca ggggccgatt
601 cccgccgcga ttggtaactt aacagaacta gatgagattg atctgcagga caacaacttc
661 actggttcta ttccagaatc tttctttgat ctcacacact tgctgaagct gtcagtaaag
721 tgcaacccct tcttgaacaa tcagctacct catggcctat ctatcagcgt ggaatttagc
781 tatggaggct gcgcttatca tagtccacct ggagcttcca atcagagaat agctgttatt
841 ggtggtgttg ccggaggatc tttggcatgc acttttgcac ttggattttt cttcgtttgt
901 ttcgacaaac gtgaaaagaa tcctcagaaa aaagactgct cttctacaag aaatcctgtt
961 tttgaagaat gtagcaccca caaagctaca aactctgcag tacaacagtt atcccttaaa
1021 tcaatccaga atgcaacgtg caacttcaaa accttaatag gggagggtgg gtttggatca
1081 gtttatcgag gaacattagc acatggtgaa gaagttgcag taaaggttcg ttcaacctcg
1141 tcgacgcagg gaacacgtga attcaacaat gagttgaggc tgctttctgc tgtgcggcat
1201 gataatttgg tcccactaat tggatattgc tgtgaaaagg atcaagaaat tttggtctat
1261 ccattcatgt ccaatggttc tctacaggat cgcctctacg gtgaggcgtc aaaaaggaaa
1321 gttcttgatt ggcctaccag actatctgtt tgcattggtg ctgctagagg actagcacat
1381 ctgcacggtt ttgctggccg ctgtatcata cacagagacg ttaagtccag taacatactt
1441 ctggaccaca gcatgtgtgg caaggttgcg gactttggtt tttctaagta tgcacctcaa
1501 gaaggtgaca gtaatgcatc aatggaagtc aggggaactg ctggatattt agaccctgaa
1561 tactattcga ctcagtcatt atcaaccaaa agtgatgtgt tcagttttgg agtggttctc
1621 ttagaaattg taaccggaag agaacctctt gatgttcaga ggcctaggga tgaatggagc
1681 ttagttgaat gggctaaacc atacattaga gaatacagaa ttgaagaaat cgttgaccct
1741 ggcataaaag ggcaatattg ttcagaggcc atgtggaggg ttcttgaggt cgcatcagca
1801 tgcactgaac ctttctcgac cttccggcca agcatggaag atgttgtcag agagctagag
1861 gacgctctga taatcgagaa caacgcttca gagtacatga ggtccatcga aagcacgggg
1921 acacttggct ccaaccgcta cctgtccatt gataggaaga tgtttgcttc gggttcagct
1981 cgattcgcat catttgacgc tacgaaaggg catttgcaaa cgatgccttc gcttccgggg
2041 tagtttggct gtgcaatggc tattgttttt atgacctcag ggggatgtca tgcttgtgtt
2101 gaaggcatca agcaacgatt ggcaagataa ggatatggag atgctccgta aactataccc
2161 atctgtacag atatcagaat tcagagatca tgcagtgatg atatgggaaa agcttcacaa
2221 acagagcagt tttgcctttg cagtttgtac tgattcaatg cttctgaaag tgccctcata
2281 tactactctt tggtttcggt cttagatcac ttcattgttt cgattcctcc tccttcagaa
2341 agtatagtac aaaggatgta attcatttaa tgctactata ttgccttttg caatctttca
2401 gacaatttga gtcgcagtta tcaacaattg gatgagtgcg tctttgttca aacaaggatt
2461 atcgatctgg ttcacttaaa tcaagctgta ctgttcccga tgtttcttcc caagcgctat
2521 gatacaggaa gtgtcaattc aaatggc
//