LOCUS AK089369 1533 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F730015O22
product:butyrophilin-like protein, full insert sequence.
ACCESSION AK089369
VERSION AK089369.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1533)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F730015O22
FEATURES Location/Qualifiers
source 1..1533
/cell_type="B6-derived CD11 +ve dendritic cells"
/clone="F730015O22"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F730015O22"
/db_xref="MGI:2428275"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS 240..983
/codon_start=1
/note="butyrophilin-like protein (LocusLink|58205
GB|NM_021396, evidence: BLASTN, 100%, match=962)"
/note="putative"
/protein_id="BAC40858.1"
/transl_table=1
/translation="MLLLLPILNLSLQLHPVAALFTVTAPKEVYTVDVGSSVSLECDF
DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRC
LVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV
PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVP
RTWPLHVFIPACTIALIFLAIVIIQRKRI"
BASE COUNT 378 a 393 c 383 g 379 t
ORIGIN
1 ggggaccaca tcatttttgt tccctttgtt ggatatatcc taatgtcaaa tgtggcatat
61 ctttgttgtc tccttctgtc tcccaactag agagaacaca cttacggctc ctgtcccggg
121 caggtttggt tgtcggtgtg attggcttcc agggaacctg atacaaggag caactgtgtg
181 ctgccttttc tgtgtctttg cttgaggagc tgtgctgggt gctgatattg acacagacca
241 tgctgctcct gctgccgata ctgaacctga gcttacaact tcatcctgta gcagctttat
301 tcaccgtgac agcccctaaa gaagtgtaca ccgtagacgt cggcagcagt gtgagcctgg
361 agtgcgattt tgaccgcaga gaatgcactg aactggaagg gataagagcc agtttgcaga
421 aggtagaaaa tgatacgtct ctgcaaagtg aaagagccac cctgctggag gagcagctgc
481 ccctgggaaa ggctttgttc cacatcccta gtgtccaagt gagagattcc gggcagtacc
541 gttgcctggt catctgcggg gccgcctggg actacaagta cctgacggtg aaagtcaaag
601 cttcttacat gaggatagac actaggatcc tggaggttcc aggtacaggg gaggtgcagc
661 ttacctgcca ggctagaggt tatcccctag cagaagtgtc ctggcaaaat gtcagtgttc
721 ctgccaacac cagccacatc aggacccccg aaggcctcta ccaggtcacc agtgttctgc
781 gcctcaagcc tcagcctagc agaaacttca gctgcatgtt ctggaatgct cacatgaagg
841 agctgacttc agccatcatt gaccctctga gtcggatgga acccaaagtc cccagaacgt
901 ggccacttca tgttttcatc ccggcctgca ccatcgcttt gatcttcctg gccatagtga
961 taatccagag aaagaggatc taggggaagc tgtattacgg aagaagatct ggacctgcgg
1021 tcttgggagt tggaaggatc tgatgggaaa ccctcaagag acttctggac tcaaagtgag
1081 aatcttgcag gacctgccat ttgcactttt gaaccctttg gacggtgacc cagggctccg
1141 aagaggagct tgtaagactg acaatcttcc ctctgtctca agactctctg aacagcaaga
1201 ccccaatggc actttagact tacccctggg atcctggacc ccagtgaggg cctaaggctc
1261 ctaatgactt tcagggtgag aacaaaagga attgctctcc gccccacccc cacctcctgc
1321 tttccgcagg gagacatgga aattcccagt tactaaaata gattgtcaat agagttattt
1381 atagccctca tttcctccgg ggacttggaa gcttcagaca gggtttttca taaacaaagt
1441 cataactgat gtgttttaca gcatcctaga atcctggcag cctctgaagt tctaattaac
1501 tggaagcatt taagcaacac gttaagtacc ccc
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