LOCUS AK088815 2099 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430026K15 product:lymphocyte antigen 9, full insert sequence. ACCESSION AK088815 VERSION AK088815.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2099) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=E430026K15 FEATURES Location/Qualifiers source 1..2099 /cell_type="thymic cells" /clone="E430026K15" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:E430026K15" /db_xref="MGI:2427712" /db_xref="taxon:10090" /dev_stage="2 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" /tissue_type="thymus" CDS 37..1671 /codon_start=1 /note="lymphocyte antigen 9 (MGD|MGI:96885 GB|NM_008534, evidence: BLASTN, 99%, match=1940)" /note="putative" /protein_id="BAC40591.1" /transl_table=1 /translation="MADLKRYWCDWALSPLSENPRMSQQQIFSPILWIPLLFLLMEKL QKPQIIVESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVSQS VCDPDLPYTCKAWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEF RATRATKNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKM EDAGPYHAYVCSEASRDPSVRHFTLLVYKRLEKPSVTNSPVHMMNGICKVVLTCSVDG GGNNVTYTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTI CSGPERNKRFWLLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTG HGQFSVLSQRYEKLDMSAKTTRHQPTPTSDTSSESSATTEEDDEKTRIHSTANSRNQV YDLVTHQDIAHALAYEGQVEYEAITPYDKVDESMDEEDMAYIQVSLNVQGETPLPQKK EDSNTIYCSVQKPKKTAQTPQQDAESPETPTYENFT" regulatory 2084..2089 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 2099 /note="putative" BASE COUNT 584 a 528 c 515 g 472 t ORIGIN 1 gatctccttt aatttgaaat ctggaagtac accatcatgg cggatctaaa gagatattgg 61 tgtgactggg ctctaagtcc actctctgaa aatccaagaa tgagtcagca gcagatattt 121 tctcccattc tttggattcc tctcctcttc ctactcatgg agaagctcca gaagcctcag 181 atcatcgtgg aatctgtgac cccatccgat actgattcct gcaccttcac cctaatctgc 241 actgtaaagg ggacaaagga cagtgtccag tacagctgga cccgagagga cacccattta 301 aatacatacg atggaagcca caccctcagg gtttcccaga gtgtctgtga ccccgaccta 361 ccctatacct gcaaagcctg gaatccagtc agccaaaaca gctcccaacc tgtccgcatc 421 tggcaattct gcacaggagc ctccagaaga aaaacagcag cggggaagac tgtggtagga 481 atcctgggag agccagtgac cctgcccttg gaatttcggg ccactcgggc cacaaagaat 541 gttgtctggg tgtttaacac gtcggttatc agccaagaac ggagaggagc agcaacagcg 601 gattctcgcc gtaagcccaa aggttctgaa gaaaggaggg tgaggacctc tgaccaggac 661 caatccctga agatcagcca gctgaagatg gaggacgcgg gcccctacca tgcctatgtg 721 tgctcagagg cctcccgaga ccccagtgtg agacatttca ccttgcttgt ctacaagaga 781 ctggagaagc ccagtgtcac caacagtcct gtgcacatga tgaacggaat ctgcaaggtt 841 gtcctgacct gttcagtgga cggtggtgga aacaatgtga catacacatg gatgcctcta 901 caaaacaaag ctgtcatgtc ccaagggaag tcgcacctca atgtctcctg ggaaagtggt 961 gaacacctgc ccaacttcac atgcacagcc cataaccctg tcagcaacag ctccagccag 1021 ttttcttctg ggaccatctg ttcaggccct gagagaaaca agaggttttg gctcctgctc 1081 ctcctggttt tgctcttgtt gatgctcatt ggcggttact tcattttgag gaaaaagaag 1141 cagtgttcgt ctttggccac caggtacaga caagcggagg tcccagctga aataccagaa 1201 accccaactg gccatggaca attttctgtg ctctcccaac ggtatgagaa actagacatg 1261 tctgctaaga ccaccaggca tcagcctaca cccacctcag ataccagctc tgagagcagc 1321 gcaacaacag aagaggatga cgaaaagacc agaattcaca gcactgctaa tagtagaaat 1381 caggtgtatg acttggtcac ccatcaggac attgcacatg ccttggccta tgaggggcaa 1441 gtagaatatg aagcaatcac tccatatgat aaagtggatg agtctatgga tgaagaggac 1501 atggcatata tacaagtgtc cctgaatgtg cagggagaga ccccacttcc tcagaagaaa 1561 gaagactcaa atacaatcta ctgctctgtg cagaagccta aaaagacggc acaaacacca 1621 cagcaagacg ctgagtctcc tgaaacccct acctatgaaa atttcacctg aagggaaaag 1681 cggctgctac ttctggggtg aggatttgga gaaaaacaga catcataaat cctcctgttt 1741 ctgcagaaag gacacatcgg aatttcctgc catggcttag actagcctga atttgatgcc 1801 ttcctcttct tgtcatcctc cttaccccat gagcccattc acaggtcagg cagagtctcc 1861 ttggagccta caggctttga acaccctgcc tttggatctc tttttcttat ctggactgcc 1921 ttgtctgcct cagtggggga ggatgcactt agtcctgttg ggacttgatg tgccagggtg 1981 ggttggtacc gtctctgaga agaaggggag atgggaattg ggggagggat gtgagggagg 2041 gatgggaggc ctgtggtcaa tatgtaaagt gaataaataa actaataaag aaaaaaatt //