LOCUS       AK088815                2099 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430026K15 product:lymphocyte
            antigen 9, full insert sequence.
ACCESSION   AK088815
VERSION     AK088815.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=E430026K15
FEATURES             Location/Qualifiers
     source          1..2099
                     /cell_type="thymic cells"
                     /clone="E430026K15"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:E430026K15"
                     /db_xref="MGI:2427712"
                     /db_xref="taxon:10090"
                     /dev_stage="2 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="NOD"
                     /tissue_type="thymus"
     CDS             37..1671
                     /codon_start=1
                     /note="lymphocyte antigen 9 (MGD|MGI:96885 GB|NM_008534,
                     evidence: BLASTN, 99%, match=1940)"
                     /note="putative"
                     /protein_id="BAC40591.1"
                     /transl_table=1
                     /translation="MADLKRYWCDWALSPLSENPRMSQQQIFSPILWIPLLFLLMEKL
                     QKPQIIVESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVSQS
                     VCDPDLPYTCKAWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEF
                     RATRATKNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKM
                     EDAGPYHAYVCSEASRDPSVRHFTLLVYKRLEKPSVTNSPVHMMNGICKVVLTCSVDG
                     GGNNVTYTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTI
                     CSGPERNKRFWLLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTG
                     HGQFSVLSQRYEKLDMSAKTTRHQPTPTSDTSSESSATTEEDDEKTRIHSTANSRNQV
                     YDLVTHQDIAHALAYEGQVEYEAITPYDKVDESMDEEDMAYIQVSLNVQGETPLPQKK
                     EDSNTIYCSVQKPKKTAQTPQQDAESPETPTYENFT"
     regulatory      2084..2089
                     /note="putative"
                     /regulatory_class="polyA_signal_sequence"
     polyA_site      2099
                     /note="putative"
BASE COUNT          584 a          528 c          515 g          472 t
ORIGIN      
        1 gatctccttt aatttgaaat ctggaagtac accatcatgg cggatctaaa gagatattgg
       61 tgtgactggg ctctaagtcc actctctgaa aatccaagaa tgagtcagca gcagatattt
      121 tctcccattc tttggattcc tctcctcttc ctactcatgg agaagctcca gaagcctcag
      181 atcatcgtgg aatctgtgac cccatccgat actgattcct gcaccttcac cctaatctgc
      241 actgtaaagg ggacaaagga cagtgtccag tacagctgga cccgagagga cacccattta
      301 aatacatacg atggaagcca caccctcagg gtttcccaga gtgtctgtga ccccgaccta
      361 ccctatacct gcaaagcctg gaatccagtc agccaaaaca gctcccaacc tgtccgcatc
      421 tggcaattct gcacaggagc ctccagaaga aaaacagcag cggggaagac tgtggtagga
      481 atcctgggag agccagtgac cctgcccttg gaatttcggg ccactcgggc cacaaagaat
      541 gttgtctggg tgtttaacac gtcggttatc agccaagaac ggagaggagc agcaacagcg
      601 gattctcgcc gtaagcccaa aggttctgaa gaaaggaggg tgaggacctc tgaccaggac
      661 caatccctga agatcagcca gctgaagatg gaggacgcgg gcccctacca tgcctatgtg
      721 tgctcagagg cctcccgaga ccccagtgtg agacatttca ccttgcttgt ctacaagaga
      781 ctggagaagc ccagtgtcac caacagtcct gtgcacatga tgaacggaat ctgcaaggtt
      841 gtcctgacct gttcagtgga cggtggtgga aacaatgtga catacacatg gatgcctcta
      901 caaaacaaag ctgtcatgtc ccaagggaag tcgcacctca atgtctcctg ggaaagtggt
      961 gaacacctgc ccaacttcac atgcacagcc cataaccctg tcagcaacag ctccagccag
     1021 ttttcttctg ggaccatctg ttcaggccct gagagaaaca agaggttttg gctcctgctc
     1081 ctcctggttt tgctcttgtt gatgctcatt ggcggttact tcattttgag gaaaaagaag
     1141 cagtgttcgt ctttggccac caggtacaga caagcggagg tcccagctga aataccagaa
     1201 accccaactg gccatggaca attttctgtg ctctcccaac ggtatgagaa actagacatg
     1261 tctgctaaga ccaccaggca tcagcctaca cccacctcag ataccagctc tgagagcagc
     1321 gcaacaacag aagaggatga cgaaaagacc agaattcaca gcactgctaa tagtagaaat
     1381 caggtgtatg acttggtcac ccatcaggac attgcacatg ccttggccta tgaggggcaa
     1441 gtagaatatg aagcaatcac tccatatgat aaagtggatg agtctatgga tgaagaggac
     1501 atggcatata tacaagtgtc cctgaatgtg cagggagaga ccccacttcc tcagaagaaa
     1561 gaagactcaa atacaatcta ctgctctgtg cagaagccta aaaagacggc acaaacacca
     1621 cagcaagacg ctgagtctcc tgaaacccct acctatgaaa atttcacctg aagggaaaag
     1681 cggctgctac ttctggggtg aggatttgga gaaaaacaga catcataaat cctcctgttt
     1741 ctgcagaaag gacacatcgg aatttcctgc catggcttag actagcctga atttgatgcc
     1801 ttcctcttct tgtcatcctc cttaccccat gagcccattc acaggtcagg cagagtctcc
     1861 ttggagccta caggctttga acaccctgcc tttggatctc tttttcttat ctggactgcc
     1921 ttgtctgcct cagtggggga ggatgcactt agtcctgttg ggacttgatg tgccagggtg
     1981 ggttggtacc gtctctgaga agaaggggag atgggaattg ggggagggat gtgagggagg
     2041 gatgggaggc ctgtggtcaa tatgtaaagt gaataaataa actaataaag aaaaaaatt
//