LOCUS       AK088649                1319 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430022K12 product:CD8
            antigen, beta chain, full insert sequence.
ACCESSION   AK088649
VERSION     AK088649.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1319)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=E430022K12
FEATURES             Location/Qualifiers
     source          1..1319
                     /cell_type="thymic cells"
                     /clone="E430022K12"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:E430022K12"
                     /db_xref="MGI:2427546"
                     /db_xref="taxon:10090"
                     /dev_stage="2 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="NOD"
                     /tissue_type="thymus"
     CDS             70..711
                     /codon_start=1
                     /note="CD8 antigen, beta chain (MGD|MGI:88347
                     GB|NM_009858, evidence: BLASTN, 98%, match=1295)"
                     /note="putative"
                     /protein_id="BAC40477.1"
                     /transl_table=1
                     /translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK
                     SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSSRPFL
                     SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF
                     PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK"
BASE COUNT          318 a          354 c          319 g          328 t
ORIGIN      
        1 tagctggctc ctaacctacc tttcagttga cagagcactg aggggaacag tgtccccaaa
       61 agcgccaaga tgcagccatg gctctggctg gtcttcagta tgaagctggc agctctctgg
      121 agcagctctg ccctcattca gaccccttcg tccctgctgg ttcaaaccaa ccatacggca
      181 aagatgtcct gtgaggttaa aagcatctct aagttaacaa gcatctactg gctgcgggag
      241 cgccaggacc ccaaggacaa gtactttgag ttcctggcct cctggagttc ttccaaagga
      301 gttttgtatg gtgaaagtgt ggacaagaaa agaaatataa ttcttgagtc ttcagactca
      361 agccggccct ttctcagtat catgaatgtg aagccagagg acagtgactt ctacttctgc
      421 gcgacggttg ggagccccaa gatggtcttt gggacaggga cgaagctgac tgtggttgat
      481 gtccttccta caactgcccc aaccaagaag actaccctga agatgaagaa gaagaagcaa
      541 tgcccgttcc cccacccaga gacccagaag ggcctgacat gcagccttac caccctcagc
      601 ctgctggtag tctgcatcct gcttctgctg gcattcctcg gagtggccgt ctacttttac
      661 tgtgtgcgga ggagagcccg aattcacttc atgaaacagt ttcacaaatg atcagcgccc
      721 acaacactga tagcctgcta gcaataaaag gactgtaact caatcaaagc aagatctgga
      781 ctagtgagag acagcgcatt caggactgga gaggcccttg cccttgctca agctgcctgc
      841 tttgaactgc tgcaagctct gtgtgtggtt tggggtctca caaggaaggc ctcagaaccc
      901 aagctcacgc acagagtggc tgaagaacca agaactccca cgccaccatg tactcttctt
      961 ggactgggcc ttggacagtg gccttccagc cactgtcttt gtcagttgct tggtaggaca
     1021 gccttattga ctctttggcc tttcatggaa aagagctagc cgggcagccc tggagaagac
     1081 tgcaaatcct cacacagaga agccacctca tgaataaggt ttcctgcaaa cagtttctgg
     1141 gctctcagca gccatcttac tttctcaggc cttgccgtgg gtttgggagg ccgttggctc
     1201 aggagacaga cttctacttc atctcctagt aggaagtttc ttaagcttca cttcttctct
     1261 ctcgtggctt atatatttct tctctcactc tctgcccttt taatgaaaat gttttggct
//