LOCUS       AK088414                2980 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430016B14 product:CD8
            antigen, alpha chain, full insert sequence.
ACCESSION   AK088414
VERSION     AK088414.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2980)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=E430016B14
FEATURES             Location/Qualifiers
     source          1..2980
                     /cell_type="thymic cells"
                     /clone="E430016B14"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:E430016B14"
                     /db_xref="MGI:2427311"
                     /db_xref="taxon:10090"
                     /dev_stage="2 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="NOD"
                     /tissue_type="thymus"
     CDS             2..670
                     /codon_start=1
                     /note="CD8 antigen, alpha chain (MGD|MGI:88346
                     GB|AJ131778, evidence: BLASTN, 99%, match=804)"
                     /note="putative"
                     /protein_id="BAC40342.1"
                     /transl_table=1
                     /translation="MASPLTRFLSLNPLLLGESIILGSGEAKPQAPELRIFPKKMDAE
                     LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF
                     SAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRT
                     PSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLIC
                     YHSR"
BASE COUNT          809 a          695 c          695 g          781 t
ORIGIN      
        1 gatggcctca ccgttgaccc gctttctgtc gctgaacccg ctgctgctgg gtgagtcgat
       61 tatcctgggg agtggagaag ctaagccaca ggcacccgaa ctccgaatct ttccaaagaa
      121 aatggacgcc gaacttggcc agaaggtgga cctggtatgt gaagtgttgg ggtccgtttc
      181 gcaaggatgc tcttggctct tccagaactc cagctccaaa ctcccccagc ccaccttcgt
      241 tgtctatatg gcttcatccc acaacaagat aacgtgggac gagaagctga attcgtcgaa
      301 actgttttct gccgtgaggg acacgaataa taagtacgtt ctcaccctga acaagttcag
      361 caaggagaac gaaggctact atttctgctc agtcatcagc aactcggtga tgtacttcag
      421 ttctgtcgtg ccagtccttc agaaagtgaa ctctactact accaagccag tgctgcgaac
      481 tccctcacct gtgcacccta ccgggacatc tcagccccag agaccagaag attgtcggcc
      541 ccgtggctca gtgaagggga ccggattgga cttcgcctgt gatatttaca tctgggcacc
      601 cttggccgga atctgcgtgg cccttctgct gtccttgatc atcactctca tctgctacca
      661 cagccgctag tcagacagga aggcaagccc agaccttcag agaaaattgt gtaaaatggc
      721 accgccagga agctacaact actacatgac ttcagagatc tcttcttgca agaggccagg
      781 ccctcctttt tcaagtttcc tgctgtctta tgtattgccc tctgtattgt tttagtaggg
      841 gtgtgatggg gacagttcct ttttctttat gaattctctt tgacacaaag catacttgta
      901 tgcatacaat gggagtaatg agcagactgt aacaccagag ctagttccag tttcggggtc
      961 catgtcactg gtggcctcag cacccacttg atataaatct cctgtctgcc catcatatag
     1021 aagaagctga agatcagagg tggaaacagc aggatctgta gacccggaga gaacccaagc
     1081 tagaggaacc ctcactgact ggtgcaggga tctcaccccc atcccctgag ctctctgttt
     1141 aggtatgtgt ctttagtata gcatgcttgt gcctcaaact gcaaggaagc aagtggtatg
     1201 aatctgtgat ctgctcagct ctggctgtga gcatcagatg taacaaatca aagtcaggag
     1261 aactgccttt agcagtgcac ctggacatca gagccccttg taagaactgg gaaattgctg
     1321 gcagtctagt ggagcggtac ggtaaatctg gaaaacactc ccctctgtca ctgaaggctg
     1381 tagtagaatc caattaaagc tattcaaacc actgccgcag accctctggg tccctgtgtc
     1441 tgcgtggaat gggtctctcg agcaggtggg caaagcgtag gattaaactg acaaacagac
     1501 gcacacagga gaggcgttga atctgaatgt aatgtcaggt cgaaactcgg actttttata
     1561 atacagaaaa aattccaggg gcgatatgtc acaccagaca aggtacactg aaatttacca
     1621 gatacaagag aatgacttcg aaaggaattt gcaggaacta gataaatgtt tacaatagag
     1681 attatcagcc ctgcctagga tcatcagcct agtgccaggt aagaatttca cactttagtg
     1741 ttaaaagcac cagggggtaa ttactcttgg caggcctcaa gaataatgta gtgtcacgga
     1801 cccctaaatt cctaggcctt gttaaatctt atcttgtctg gagaatcccc atttatcagg
     1861 agagtatctc aacttgctct tggcatggaa tgtagcctgt actaaagatt tttatctcag
     1921 tgagattccc aggctctttc tgcagatcaa ctgggctaat ggccttgttt attgtaatgc
     1981 ttaattagtt actgaatagg ttaaactcct tgctgttatc tgggatcttg gaacaatggg
     2041 ggcgccgggg gggggggggg cggggggggc tttagctatg tcagaattca atcttaaaag
     2101 gcacttacaa tagggtaatg cttaatagag ggcacatgga tccatacact agactaacgc
     2161 gggagtggaa aattaattta tggtttagag ggaacgccag actccaggag ggaatttctg
     2221 tgaaactctt ttccttgtgg gcagcttcca agcttccgct tgtcaaactg acccaactgg
     2281 agagcgtggc tttcaccaga ctccaggagg gagctttcgt gaaactcttc ctcatgagat
     2341 agcttccaag ctttcgcctg tcaagctgac tccaccagag tgcgtggcaa accaccactg
     2401 tgaaattcct gtagaattat gattctctct gctcttggac agcagagggt gaggtttgac
     2461 agatacgact caggcatcag agaagctgca ggcaggccct ctcccatgtc taaacatgag
     2521 acttggatgt gctcctggga tcaccagcat gctttatact ctataaacat agaatccttg
     2581 gagaacattc cttagcaccc ccggaaggca gatgtaaaga ggcagactag acgtggagga
     2641 agacgctgac tgtcaaaact gctgccccag agctaatttc ctctcacagt accatataag
     2701 taacaaataa taggcaataa aaacctgaag gaactaagag tcacccatgg tcctctatct
     2761 attgttacta tcattttata cctgattatt tcctatgcat atatatgtaa gaaagattac
     2821 accctgggtt ttaaaacaca acagtttttg taagcagatt tagtaaataa acatgtatat
     2881 tatcatttaa tggttaaata gcatttcata gtttggttgt atccatttag tattaaattg
     2941 tttcaaactt ccccctacta ttacactact aaacttgcgc
//