LOCUS AK088414 2980 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430016B14 product:CD8 antigen, alpha chain, full insert sequence. ACCESSION AK088414 VERSION AK088414.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2980) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=E430016B14 FEATURES Location/Qualifiers source 1..2980 /cell_type="thymic cells" /clone="E430016B14" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:E430016B14" /db_xref="MGI:2427311" /db_xref="taxon:10090" /dev_stage="2 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" /tissue_type="thymus" CDS 2..670 /codon_start=1 /note="CD8 antigen, alpha chain (MGD|MGI:88346 GB|AJ131778, evidence: BLASTN, 99%, match=804)" /note="putative" /protein_id="BAC40342.1" /transl_table=1 /translation="MASPLTRFLSLNPLLLGESIILGSGEAKPQAPELRIFPKKMDAE LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF SAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRT PSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLIC YHSR" BASE COUNT 809 a 695 c 695 g 781 t ORIGIN 1 gatggcctca ccgttgaccc gctttctgtc gctgaacccg ctgctgctgg gtgagtcgat 61 tatcctgggg agtggagaag ctaagccaca ggcacccgaa ctccgaatct ttccaaagaa 121 aatggacgcc gaacttggcc agaaggtgga cctggtatgt gaagtgttgg ggtccgtttc 181 gcaaggatgc tcttggctct tccagaactc cagctccaaa ctcccccagc ccaccttcgt 241 tgtctatatg gcttcatccc acaacaagat aacgtgggac gagaagctga attcgtcgaa 301 actgttttct gccgtgaggg acacgaataa taagtacgtt ctcaccctga acaagttcag 361 caaggagaac gaaggctact atttctgctc agtcatcagc aactcggtga tgtacttcag 421 ttctgtcgtg ccagtccttc agaaagtgaa ctctactact accaagccag tgctgcgaac 481 tccctcacct gtgcacccta ccgggacatc tcagccccag agaccagaag attgtcggcc 541 ccgtggctca gtgaagggga ccggattgga cttcgcctgt gatatttaca tctgggcacc 601 cttggccgga atctgcgtgg cccttctgct gtccttgatc atcactctca tctgctacca 661 cagccgctag tcagacagga aggcaagccc agaccttcag agaaaattgt gtaaaatggc 721 accgccagga agctacaact actacatgac ttcagagatc tcttcttgca agaggccagg 781 ccctcctttt tcaagtttcc tgctgtctta tgtattgccc tctgtattgt tttagtaggg 841 gtgtgatggg gacagttcct ttttctttat gaattctctt tgacacaaag catacttgta 901 tgcatacaat gggagtaatg agcagactgt aacaccagag ctagttccag tttcggggtc 961 catgtcactg gtggcctcag cacccacttg atataaatct cctgtctgcc catcatatag 1021 aagaagctga agatcagagg tggaaacagc aggatctgta gacccggaga gaacccaagc 1081 tagaggaacc ctcactgact ggtgcaggga tctcaccccc atcccctgag ctctctgttt 1141 aggtatgtgt ctttagtata gcatgcttgt gcctcaaact gcaaggaagc aagtggtatg 1201 aatctgtgat ctgctcagct ctggctgtga gcatcagatg taacaaatca aagtcaggag 1261 aactgccttt agcagtgcac ctggacatca gagccccttg taagaactgg gaaattgctg 1321 gcagtctagt ggagcggtac ggtaaatctg gaaaacactc ccctctgtca ctgaaggctg 1381 tagtagaatc caattaaagc tattcaaacc actgccgcag accctctggg tccctgtgtc 1441 tgcgtggaat gggtctctcg agcaggtggg caaagcgtag gattaaactg acaaacagac 1501 gcacacagga gaggcgttga atctgaatgt aatgtcaggt cgaaactcgg actttttata 1561 atacagaaaa aattccaggg gcgatatgtc acaccagaca aggtacactg aaatttacca 1621 gatacaagag aatgacttcg aaaggaattt gcaggaacta gataaatgtt tacaatagag 1681 attatcagcc ctgcctagga tcatcagcct agtgccaggt aagaatttca cactttagtg 1741 ttaaaagcac cagggggtaa ttactcttgg caggcctcaa gaataatgta gtgtcacgga 1801 cccctaaatt cctaggcctt gttaaatctt atcttgtctg gagaatcccc atttatcagg 1861 agagtatctc aacttgctct tggcatggaa tgtagcctgt actaaagatt tttatctcag 1921 tgagattccc aggctctttc tgcagatcaa ctgggctaat ggccttgttt attgtaatgc 1981 ttaattagtt actgaatagg ttaaactcct tgctgttatc tgggatcttg gaacaatggg 2041 ggcgccgggg gggggggggg cggggggggc tttagctatg tcagaattca atcttaaaag 2101 gcacttacaa tagggtaatg cttaatagag ggcacatgga tccatacact agactaacgc 2161 gggagtggaa aattaattta tggtttagag ggaacgccag actccaggag ggaatttctg 2221 tgaaactctt ttccttgtgg gcagcttcca agcttccgct tgtcaaactg acccaactgg 2281 agagcgtggc tttcaccaga ctccaggagg gagctttcgt gaaactcttc ctcatgagat 2341 agcttccaag ctttcgcctg tcaagctgac tccaccagag tgcgtggcaa accaccactg 2401 tgaaattcct gtagaattat gattctctct gctcttggac agcagagggt gaggtttgac 2461 agatacgact caggcatcag agaagctgca ggcaggccct ctcccatgtc taaacatgag 2521 acttggatgt gctcctggga tcaccagcat gctttatact ctataaacat agaatccttg 2581 gagaacattc cttagcaccc ccggaaggca gatgtaaaga ggcagactag acgtggagga 2641 agacgctgac tgtcaaaact gctgccccag agctaatttc ctctcacagt accatataag 2701 taacaaataa taggcaataa aaacctgaag gaactaagag tcacccatgg tcctctatct 2761 attgttacta tcattttata cctgattatt tcctatgcat atatatgtaa gaaagattac 2821 accctgggtt ttaaaacaca acagtttttg taagcagatt tagtaaataa acatgtatat 2881 tatcatttaa tggttaaata gcatttcata gtttggttgt atccatttag tattaaattg 2941 tttcaaactt ccccctacta ttacactact aaacttgcgc //