LOCUS AK088372 1342 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:E430014C21 product:CD8
antigen, beta chain, full insert sequence.
ACCESSION AK088372
VERSION AK088372.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1342)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E430014C21
FEATURES Location/Qualifiers
source 1..1342
/cell_type="thymic cells"
/clone="E430014C21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E430014C21"
/db_xref="MGI:2427269"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="thymus"
CDS 71..712
/codon_start=1
/note="CD8 antigen, beta chain (MGD|MGI:88347
GB|NM_009858, evidence: BLASTN, 98%, match=1317)"
/note="putative"
/protein_id="BAC40311.1"
/transl_table=1
/translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK
SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSSRPFL
SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF
PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK"
regulatory 1326..1331
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1342
/note="putative"
BASE COUNT 328 a 357 c 325 g 332 t
ORIGIN
1 gaagctggct cctaacctac ctttcagttg acagagcact gaggggaaca gtgtccccaa
61 aagcgccaag atgcagccat ggctctggct ggtcttcagt atgaagctgg cagctctctg
121 gagcagctct gccctcattc agaccccttc gtccctgctg gttcaaacca accatacggc
181 aaagatgtcc tgtgaggtta aaagcatctc taagttaaca agcatctact ggctgcggga
241 gcgccaggac cccaaggaca agtactttga gttcctggcc tcctggagtt cttccaaagg
301 agttttgtat ggtgaaagtg tggacaagaa aagaaatata attcttgagt cttcagactc
361 aagccggccc tttctcagta tcatgaatgt gaagccagag gacagtgact tctacttctg
421 cgcgacggtt gggagcccca agatggtctt tgggacaggg acgaagctga ctgtggttga
481 tgtccttcct acaactgccc caaccaagaa gactaccctg aagatgaaga agaagaagca
541 atgcccgttc ccccacccag agacccagaa gggcctgaca tgcagcctta ccaccctcag
601 cctgctggta gtctgcatcc tgcttctgct ggcattcctc ggagtggccg tctactttta
661 ctgtgtgcgg aggagagccc gaattcactt catgaaacag tttcacaaat gatcagcgcc
721 cacaacactg atagcctgct agcaataaaa ggactgtaac tcaatcaaag caagatctgg
781 actagtgaga gacagcgcat tcaggactgg agaggccctt gcccttgctc aagctgcctg
841 ctttgaactg ctgcaagctc tgtgtgtggt ttggggtctc acaaggaagg cctcagaacc
901 caagctcacg cacagagtgg ctgaagaacc aagaactccc acgccaccat gtactcttct
961 tggactgggc cttggacagt ggccttccag ccactgtctt tgtcagttgc ttggtaggac
1021 agccttattg actctttggc ctttcatgga aaagagctag ccgggcagcc ctggagaaga
1081 ctgcaaatcc tcacacagag aagccacctc atgaataagg tttcctgcaa acagtttctg
1141 ggctctcagc agccatctta ctttctcagg ccttgccgtg ggtttgggag gccgttggct
1201 caggagacag acttctactt catctcctag taggaagttt cttaagcttc acttcttctc
1261 tctcgtggtt tatatatttc ttctctcact ctctgccctt ttaatgaaaa tgttttggct
1321 ataaaaataa agtcctgccg gg
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