LOCUS AK088214 920 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430007G16 product:CD8 antigen, alpha chain, full insert sequence. ACCESSION AK088214 VERSION AK088214.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 920) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=E430007G16 FEATURES Location/Qualifiers source 1..920 /cell_type="thymic cells" /clone="E430007G16" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:E430007G16" /db_xref="MGI:2427111" /db_xref="taxon:10090" /dev_stage="2 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" /tissue_type="thymus" CDS 7..750 /codon_start=1 /note="CD8 antigen, alpha chain (MGD|MGI:88346 GB|AK017889, evidence: BLASTN, 99%, match=863)" /note="putative" /protein_id="BAC40215.1" /transl_table=1 /translation="MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAE LGQKVDPVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF SAVRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRT PSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLIC YHRSRKRVCKCPRPLVRQEGKPRPSEKIV" BASE COUNT 213 a 252 c 222 g 233 t ORIGIN 1 gacaccatgg cgtcaccgtt gacccgcttt ctgtcgctga acctgctgct gctgggtgag 61 tcgattatcc tggggagtgg agaagctaag ccacaggcac ccgaactccg aatctttcca 121 aagaaaatgg acgccgaact tggccagaag gtggacccgg tatgtgaagt gttggggtcc 181 gtttcgcaag gatgctcttg gctcttccag aactccagct ccaaactccc ccagcccacc 241 ttcgttgtct atatggcttc atcccacaac aagataacgt gggacgagaa gctgaattcg 301 tcgaaactgt tttctgccgt gagggacacg aataataagt acgttctcac cctgaacaag 361 ttcagcaagg aaaacgaagg ctactatttc tgctcagtca tcagcaactc ggtgatgtac 421 ttcagttctg tcgtgccagt ccttcagaaa gtgaactcta ctactaccaa gccagtgctg 481 cgaactccct cacctgtgca ccctaccggg acatctcagc cccagagacc agaagattgt 541 cggccccgtg gctcagtgaa ggggaccgga ttggacttcg cctgtgatat ttacatctgg 601 gcacccttgg ccggaatctg cgtggccctt ctgctgtcct tgatcatcac tctcatctgc 661 taccacagga gccgaaagcg tgtttgcaaa tgtcccaggc cgctagtcag acaggaaggc 721 aagcccagac cttcagagaa aattgtgtaa aatggcaccg ccaggaagct acaactacta 781 catgacttca gagatctctt cttgcaagag gccaggccct cctttttcaa gtttcctgct 841 gtcttctgta ttgccctctg tattgtttta gtaggggtgt gatggggaca gttccttttt 901 ctttatgaat tctctttgac //