LOCUS AK087944 1429 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:E430001E21 product:CD8
antigen, beta chain, full insert sequence.
ACCESSION AK087944
VERSION AK087944.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1429)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E430001E21
FEATURES Location/Qualifiers
source 1..1429
/cell_type="thymic cells"
/clone="E430001E21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E430001E21"
/db_xref="MGI:2426841"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="thymus"
CDS 23..664
/codon_start=1
/note="CD8 antigen, beta chain (MGD|MGI:88347
GB|NM_009858, evidence: BLASTN, 98%, match=1394)"
/note="putative"
/protein_id="BAC40052.1"
/transl_table=1
/translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK
SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSSRPFL
SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKEKQCPF
PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK"
BASE COUNT 352 a 380 c 352 g 345 t
ORIGIN
1 gagtgtcccc aaaagcgcca agatgcagcc atggctctgg ctggtcttca gtatgaagct
61 ggcagctctc tggagcagct ctgccctcat tcagacccct tcgtccctgc tggttcaaac
121 caaccatacg gcaaagatgt cctgtgaggt taaaagcatc tctaagttaa caagcatcta
181 ctggctgcgg gagcgccagg accccaagga caagtacttt gagttcctgg cctcctggag
241 ttcttccaaa ggagttttgt atggtgaaag tgtggacaag aaaagaaata taattcttga
301 gtcttcagac tcaagccggc cctttctcag tatcatgaat gtgaagccag aggacagtga
361 cttctacttc tgcgcgacgg ttgggagccc caagatggtc tttgggacag ggacgaagct
421 gactgtggtt gatgtccttc ctacaactgc cccaaccaag aagactaccc tgaagatgaa
481 gaaggagaag caatgcccgt tcccccaccc agagacccag aagggcctga catgcagcct
541 taccaccctc agcctgctgg tagtctgcat cctgcttctg ctggcattcc tcggagtggc
601 cgtctacttt tactgtgtgc ggaggagagc ccgaattcac ttcatgaaac agtttcacaa
661 atgatcagcg cccacaacac tgatagcctg ctagcaataa aaggactgta actcaatcaa
721 agcaagatct ggactagtga gagacagcgc attcaggact ggagaggccc ttgcccttgc
781 tcaagctgcc tgctttgaac tgctgcaagc tctgtgtgtg gtttggggtc tcacaaggaa
841 ggcctcagaa ccaagctcac gcacagagtg gctgaagaac caagaactcc cacgccacca
901 tgtactcttc ttggactggg ccttggacag tggccttcca gccactgtct ttgtcagttg
961 cttggtagga cagccttatt gactctttgg cctttcatgg aaaagagcta gccgggcagc
1021 cctggagaag actgcaaatc ctcacacaga gaagccacct catgaataag gtttcctgca
1081 aacagtttct gggctctcag cagccatctt actttctcag gccttgccgt gggtttggga
1141 ggccgttggc tcaggagaca gacttctact tcatctccta gtaggaagtt tcttaagctt
1201 cacttcttct ctctcgtggc ttatatattt cttctctcac tctctgccct tttaatgaaa
1261 atgttttggc tataaaaata aagtcctgcc gggcatggtg gtgcatgcct ttaatcccag
1321 cactcaggag gcagaggcag gcggatctct gagttcgagg ccagcctggt ctacagagtg
1381 agttccagga cagccaaggc tacagagaaa ccctgtctca aaaaaacac
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