LOCUS AK079513 2541 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A130091H03 product:CD86 antigen, full
insert sequence.
ACCESSION AK079513
VERSION AK079513.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2541)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A130091H03
FEATURES Location/Qualifiers
source 1..2541
/clone="A130091H03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A130091H03"
/db_xref="MGI:2402693"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 118..1047
/codon_start=1
/note="CD86 antigen (MGD|MGI:101773 GB|NM_019388,
evidence: BLASTN, 100%, match=984)"
/note="putative"
/protein_id="BAC37666.1"
/transl_table=1
/translation="MDPRCTMGLAILIFVTVLLISDAVSVETQAYFNGTAYLPCPFTK
AQNISLSELVVFWQDQQKLVLYEHYLGTEKLDSVNAKYLGRTSFDRNNWTLRLHNVQI
KDMGSYDCFIQKKPPTGSIILQQTLTELSVIANFSEPEIKLAQNVTGNSGINLTCTSK
QGHPKPKKMYFLITNSTNEYGDNMQISQDNVTELFSISNSLSLSFPDGVWHMTVVCVL
ETESMKISSKPLNFTQEFPSPQTYWKEITASVTVALLLVMLLIIVCHKKPNQPSRPSN
TASKLERDSNADRETINLKELEPQIASAKPNAE"
regulatory 2514..2519
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2541
/note="putative"
BASE COUNT 770 a 546 c 553 g 672 t
ORIGIN
1 gattgctgag gaagaaagag gagcaagcag acgcgtaaga gtggctcctg taggcagcac
61 ggacttgaac aaccagactc ctgtagacgt gttccagaac ttacggaagc acccacgatg
121 gaccccagat gcaccatggg cttggcaatc cttatctttg tgacagtctt gctgatctca
181 gatgctgttt ccgtggagac gcaagcttat ttcaatggga ctgcatatct gccgtgccca
241 tttacaaagg ctcaaaacat aagcctgagt gagctggtag tattttggca ggaccagcaa
301 aagttggttc tgtacgagca ctatttgggc acagagaaac ttgatagtgt gaatgccaag
361 tacctgggcc gcacgagctt tgacaggaac aactggactc tacgacttca caatgttcag
421 atcaaggaca tgggctcgta tgattgtttt atacaaaaaa agccacccac aggatcaatt
481 atcctccaac agacattaac agaactgtca gtgatcgcca acttcagtga acctgaaata
541 aaactggctc agaatgtaac aggaaattct ggcataaatt tgacctgcac gtctaagcaa
601 ggtcacccga aacctaagaa gatgtatttt ctgataacta attcaactaa tgagtatggt
661 gataacatgc agatatcaca agataatgtc acagaactgt tcagtatctc caacagcctc
721 tctctttcat tcccggatgg tgtgtggcat atgaccgttg tgtgtgttct ggaaacggag
781 tcaatgaaga tttcctccaa acctctcaat ttcactcaag agtttccatc tcctcaaacg
841 tattggaagg agattacagc ttcagttact gtggccctcc tccttgtgat gctgctcatc
901 attgtatgtc acaagaagcc gaatcagcct agcaggccca gcaacacagc ctctaagtta
961 gagcgggata gtaacgctga cagagagact atcaacctga aggaacttga accccaaatt
1021 gcttcagcaa aaccaaatgc agagtgaagg cagtgagagc ctgaggaaag agttaaaaat
1081 tgctttgcct gaaataagaa gtgcagagtt tctcagaatt caaaaatgtt ctcagctgat
1141 tggaattcta cagttgaata attaaagaac aaaatacaca acagtgtcca tattttatcc
1201 tgtttccttt ccaagttttt gggcaatgtc aattgtgtcc cctatgccag gagcagacat
1261 ctattttgtc ttgctttgtt taactcagtg cacactcata ggccaagagc actgaaatgg
1321 cttctttccc aggaataaca ttttggatca atctctccta cttgagatca gattcttctt
1381 ctaattttgc atagtgtgtt tttatatgga actccttgtt gtaggaatac tggcttttat
1441 ctgtcttgca cacttgcata cttatatact tatacctgga cagctacctc ttcagtcagg
1501 atgggagtgg tatatttggt gatgttattt gatgtgttcg tgttgctatc ttaaaacagc
1561 aaagagcata tactatagta gctcaactac aatgatctag agaaagaccc agcacttata
1621 agaaacactg tccctccatc agggtcaata atgaatacaa tgacctaagt aatatacagg
1681 tgacagcaac agcacagagt tctcagtgct ggcaaatcaa gaaacacaaa tatggaacca
1741 tctctagatc caagagccac tcctacctgg gctgccacag atactggaag aatccacctg
1801 cctggccagc aagtcacaac ttagcaggca gcactgaaga aagcaagatg tactgtatgc
1861 ccttttaaga aaatgcctgg aaaggtctgg agaatgctgt gcaaggataa gacagccaag
1921 cactcaaaac caggagacat cactagaatc caaccaacaa atgtttatgg aaggactgat
1981 ctgcccagtc cattgaaaag tcaagaggtc agagatagac cagtgtgtgt ctcaatggat
2041 gtagatatca gccacctcgg tgctcaacag gtattttatg atctccttgt ttcaaattca
2101 tctagatgta gaactaggga gagagcagtc acattgatga aaggctagga ctctttcagc
2161 tcatggcttg tgtggaagga gggaaagcag aaatcacaac actctgagac tactgtagtc
2221 tgcagatacc tgagtgggtg tggcttggcc tttcaaagga caaagagcaa ctaatgctga
2281 aagcacatag tgtatctata cggcatggaa tagtcatcac ccagacttaa agagaacttt
2341 ggcaggtctg agcagcaaaa tattgttgtt tccattttac ataaagggcc ctggagggct
2401 atagactatt ccgctggcag ggctcatgct tgtaatgtgt ccatcttgat tcaccctgtg
2461 cagactctta agatctggcc agttaccaac atgttctgta cagagtggat ttcaataaag
2521 ttttcttgaa ttttttcaag c
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