LOCUS AK072472 2731 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023119J10, full insert
sequence.
ACCESSION AK072472
VERSION AK072472.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2731)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2731
/clone="J023119J10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 66..2285
/db_xref="Osa1:LOC_Os08g39950"
/db_xref="RAP-DB:Os08g0510300"
/note="(RAP Annotation release2) K+ potassium transporter
family protein"
/note="(Rice Genome Annotation Project) potassium
transporter 17, putative, expressed"
/note="mapping to R08-TIGRv4S1-000847F (Chr.8: short
arm=25180700, long arm=25185728, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG92986.1"
/translation="MEYHHRPHSPPPSDDDVVVIQMNAAAIAAVDEWSSTNEVDDAAA
GKGGGLTRRTFSQAYKMKHRTPLEFTWRQVALLSFQSLGVVYGDLGTSPLYVFSSISL
DDPGEADFVGILSIILWTFTMICLVKYVFIVLKADDHGEGGTFALYSLLRQHVNFKGN
MPVPVTHLASDINLKFHSKKRILTSKLLKFLEQSTKWQAVITYIVLAGTCMVLGDGAL
TPAISVLSAVQGIQSRSSSITQAHVVLLSVIILFILFFFQKHGTSKVSFTFSPIMILW
FTFVAFIGLYNIIKHYPPILKAVSPHYIIIYFIRNKRAAWETLGAIVLCITGAEAMFA
DLGHFNKSSIQMAFSVIVYPSMILAYAGQAAFLVKNPSKLSTTFYSSTPEPLFWPMFI
IATLAAIVASQALISASFSIIRQSIALGCFPRVTMKHTSGKHEGQVYSPEINYFLMVA
CILITVGFKGGPEIGQAFGVAVIFVMLFTTNLMTVVMLIIWESNIALASLFFVFFFSI
EGIYMTSLMNKILQGGWVPFAITAFFLIITLSWTYGRSKKGEYELANVMEREEFIKTV
TTRSRVPGVCIFCTDMMNGIPPIVRHYVQHVASLRELMVFVTIRVLPVRTVLPEERFI
IDKLEPVGVYRCIVQYGYMDNHNMEGDDYVASVIASLKEIAENDDEILVLDSALINGS
TFVLGRTIIKMGTRHNCLKRFFINNLYRFLQKNFRSNMSSLKINPGKTLQVGMLYEI"
BASE COUNT 717 a 606 c 620 g 788 t
ORIGIN
1 ggttgctata gctaggtcaa atcgatcgat ctcgatcgat cgggtggtcg atccgatcag
61 cagccatgga gtaccaccac cggccgcatt cgccgccgcc gtcggacgac gacgtcgtcg
121 tcatccagat gaacgccgcc gccatcgccg ccgtcgacga gtggagctcc accaacgagg
181 tggacgacgc cgccgccggc aagggcggcg gcctcacccg ccggaccttc agccaggcct
241 acaagatgaa gcaccggacg ccactggagt tcacgtggag gcaggtggcg ttgctgagct
301 tccagtcgct gggggtggtg tacggagacc tggggacgtc gccgctgtac gtgttctcgt
361 cgatctcgct ggacgacccc ggcgaggcgg acttcgtcgg aatcctcagc atcatcctct
421 ggaccttcac catgatctgc ctcgtcaagt acgtcttcat cgtcctcaaa gctgacgacc
481 atggagaagg tggcactttt gcgctgtact cgcttctgcg tcagcatgtg aatttcaagg
541 gaaacatgcc agtgccagtc acacacttgg catctgacat caacctcaag ttccacagta
601 agaagaggat tctgacgtcc aagctcctca agttcttgga acaaagcaca aaatggcagg
661 cagtcattac ctacatcgtg cttgctggga cttgcatggt gctaggagat ggtgccctca
721 ctccagccat ctcagttctg tcagctgttc aaggaatcca atcaagatct tcaagcataa
781 cacaagctca tgttgtgttg ctatctgtga ttatcttgtt catactattc ttcttccaaa
841 aacatggcac aagcaaagtc agcttcactt tttctcccat tatgatcttg tggtttacat
901 tcgttgcatt cattggattg tacaatatca tcaagcacta tccaccaatt ctgaaagctg
961 tgtcgcccca ttacataatc atatacttca taaggaacaa aagagcggcc tgggagacac
1021 ttggagcaat tgttctatgc ataacaggtg ctgaagctat gtttgctgac ttgggtcatt
1081 tcaacaaatc atcaatccag atggcatttt cagtcatagt ttatccatca atgatccttg
1141 cgtatgccgg gcaggcagca tttttggtca agaacccttc aaagctcagc acgacgttct
1201 acagtagtac tccagagcca ctattttggc ccatgtttat catagcaact ttggctgcta
1261 ttgttgcgag ccaagcattg atatcagcca gcttctccat cattcgacaa tcaattgctt
1321 tgggttgttt tccaagagtt accatgaagc atacctcagg caaacatgaa ggccaagtat
1381 actctccaga gatcaattac tttttgatgg ttgcgtgcat cttaattact gttgggttta
1441 agggtggacc agagataggg caagcctttg gcgtggcagt gatatttgtt atgcttttta
1501 caacaaacct gatgacagtg gtcatgctta taatatggga aagtaacatt gcacttgcca
1561 gtctattttt tgtttttttc ttttccatcg aaggcattta catgacctcg ttaatgaaca
1621 agattctaca aggtggctgg gttccatttg ccattactgc atttttcctg ataattacac
1681 tatcttggac ttatggaaga agtaagaagg gtgaatatga acttgccaat gtgatggaaa
1741 gggaggaatt tattaagaca gtaacaacga gaagccgagt acctggagta tgcatcttct
1801 gcacggatat gatgaatggc atcccgccga ttgtgcgcca ttatgttcag catgtggctt
1861 ccctccgtga actgatggtg tttgtcacta tcagggttct tccggtgaga actgtccttc
1921 ctgaagagcg cttcatcata gacaagctag agccagtggg tgtctacagg tgcatagtcc
1981 aatatggcta tatggacaac cacaatatgg agggtgacga ttacgttgca tcagttattg
2041 catccctcaa ggaaatagct gagaatgatg atgagattct ggtgttggat tcagctttga
2101 taaatggatc aacctttgtt cttggcagga ctatcataaa gatgggaact aggcacaact
2161 gtttgaagcg cttttttatt aataaccttt acaggttctt gcaaaagaac ttcagatcca
2221 acatgtccag tctaaagata aatcctggta aaaccttgca agttggaatg ctatatgaga
2281 tttgaagaag gtgaccaatt gtggatgcat aaatgtgaag tgttagctag aatgctagat
2341 tgctgaaatt ggcagacaga caagtttttc ttgattataa atgtcacaga attgtttgga
2401 tgtgacccat attttcttag catgcaaacc atctgcaata attgtcctgt gagtagatga
2461 ccaagttata tacacttttg ggataatttt attagtggga tgcaattctc tttttttctc
2521 ccctaatatt tcacactcta aactgcacca acttgtaggc tggttagtga atggtaaaga
2581 aaaaatgttg cacagtgtgc aatttatgta cacataccat tctcatttat tttccagttg
2641 tattttgata agatggttat ctaaatcata ttctttggtg aaagtgtaaa cctccttgta
2701 aaacaatata gatcttaatg ttgcaatgct c
//