LOCUS AK072330 2944 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023039P13, full insert
sequence.
ACCESSION AK072330
VERSION AK072330.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2944)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2944
/clone="J023039P13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 299..2494
/db_xref="Osa1:LOC_Os01g54990"
/db_xref="RAP-DB:Os01g0753500"
/note="(RAP Annotation release2) Transcriptional factor
B3 family protein"
/note="(Rice Genome Annotation Project) auxin response
factor 4, putative, expressed"
/note="mapping to R01-TIGRv4S1-001343R (Chr.1: short
arm=31944036, long arm=31950052, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92927.1"
/translation="MASSASSSSSPSSRPPLMALPSFYRPPWPSERGGEQRATDCWAG
SPAAGGGRARATAMGIDLNNTASGGEEDAPAPGPVCRDLWHACAGPVVSLPRRGSAVV
YLPQGHLSAAGAGGGIRGEVAVALPPHVACRVVDVELCADAATDEVYARLALRAEGEV
FERNLHGGGIEREDDMEDGDEERKSRMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFP
PLDHKQLRPSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVL
FLRGDDGELRLGVRRATQLKNEAIFKAFSSESSKMRTLSAVADSLKHGSVFHICYNPR
ATASEYVVPYWKFVKSFNHPVCIGMRFKFHFESEDVNERRSGMIAGVSEVDPIRWPGS
KWRSLLVRWEDATDCNSQNRVSPWEIEIVGGSISVAHSLSASSSKRTKLCPQGNLDVP
ALYGNGRPDSVETEKFPRVLQGQELMGSRTHRATCSPQSIDITKSKSFDAWRFLTDTR
SCMLGSSTSRLPVQYSGYTHQSVSFGESIGFPEVLQGQEISQTVPPFQGMLPDACSAK
SRYELKNYVCTPATMNGLSSANEGYCLSLSTVPPSPPSSLMLYQTGVPQLELASKNND
KSGNDSQPALRQHKLLSETSWDQFKIGKASTPGNATKPGNGGREVDRTSCRLFGFSLT
EKIIPTDKDGEKEVSYETDCQNPRMLDLFGYNCSTPGALHALCAAPLGI"
BASE COUNT 683 a 700 c 844 g 717 t
ORIGIN
1 gcctcgctga ctcgctccag ccagcagcag cagcagcagc cactgctcgc gacggaacag
61 acgacaccac cacgacgccc gcgtcataaa ggcatgggca ttgtcgcagg ctagccacag
121 cgacggggta gcagcagcat cagcagcagc agcggcaaca gcgaccggca ttgatagcgg
181 cagctgagga aggaagaggg cgcgcggtcg ccgcaggagc ggagcagggg gggcatgggc
241 tgggcgggct gagcgctgag caggagatgg ctggagagcg acgccctcgg aggcattaat
301 ggcgtcgtcc gcatcctcct cctcctcccc atcctcgcgg ccgccgctga tggctctccc
361 ctctttttac cggccccctt ggccgtccga gaggggcggc gagcagcgag ccaccgactg
421 ttgggccgga tccccagcgg cgggaggcgg ccgggcgcgt gccaccgcca tgggcatcga
481 cctcaacaac accgcgagcg gcggcgagga ggacgcgccg gcgccggggc cggtgtgccg
541 ggatctgtgg cacgcgtgcg ctgggccggt ggtgtcgctg ccgcggcggg gcagcgcggt
601 cgtgtacctg ccgcaggggc acctctccgc ggccggcgcc ggcggcggga tccgcgggga
661 ggtggcggtt gccctccctc cccacgtggc gtgccgcgtc gtggacgtcg agctatgcgc
721 ggatgcagcg acggacgagg tgtacgcgcg actggcgctg cgggcggagg gcgaggtatt
781 tgagaggaac ttgcatggtg gtggaatcga aagggaggat gacatggagg atggtgatga
841 ggaaaggaag tccaggatgc tgcacatgtt ctgcaaaaca ctaacggcct ctgatacaag
901 cacacatgga gggttctctg ttcctcgtcg ggctgctgag gattgctttc cacctctgga
961 ccacaaacag ctaaggcctt ctcaagagct tgttgccaag gatttgcatg gagcaaagtg
1021 gaggttccgc catatttata gaggtcaacc tcgcaggcat cttttaacaa ctggatggag
1081 ctcctttgtc aataaaaaga aactggtctc aggggacgcg gtgttatttc tccggggtga
1141 tgatggtgag ctaagattgg gtgttcgaag agctactcag cttaaaaatg aagcgatttt
1201 caaagctttt agtagcgaaa gttcaaagat gcgcacactg tcggctgtgg ctgattcctt
1261 gaaacatgga agtgtttttc acatttgtta caacccaagg gctactgctt ctgagtacgt
1321 tgttccatat tggaagttcg tgaaaagctt caaccatcca gtttgtattg gaatgaggtt
1381 caagtttcat tttgagagtg aagatgttaa tgagaggcgt tctggaatga ttgccggtgt
1441 tagtgaagta gaccccatca gatggcctgg ttcaaagtgg agaagccttc tggttcgatg
1501 ggaggatgct actgactgca acagccaaaa tagagtatct ccatgggaga ttgagatagt
1561 tggtggttca atctctgttg ctcattctct gtcggcatcc agttctaaaa gaaccaaatt
1621 atgccctcag ggcaatttgg acgtgccagc tctgtatgga aatggtcgtc cagactcggt
1681 ggaaactgaa aagttcccca gggtcttgca aggtcaagaa ttgatgggtt ctaggaccca
1741 tcgtgctact tgttctcctc agtcaatcga cattacaaaa agtaagtctt ttgatgcttg
1801 gagattcctt actgatacac gaagctgcat gttgggcagt tcaacaagca gacttccagt
1861 gcagtactct ggctataccc accaatctgt aagcttcggt gaatctattg gattcccaga
1921 ggtcttgcaa ggtcaagaaa tttctcagac agttcctccg tttcaaggaa tgttgcctga
1981 tgcatgttca gcgaaaagca gatatgaatt aaagaattat gtgtgcaccc cagctaccat
2041 gaatggacta tcatctgcaa atgaaggata ttgtctctcc ctgtcaactg tgccaccttc
2101 tccaccttcc agtcttatgt tataccaaac aggggtacca cagcttgaat tggcaagcaa
2161 gaacaatgac aaaagtggaa atgacagcca accagccttg cgacagcaca agttgctcag
2221 tgaaactagc tgggaccagt ttaaaattgg aaaggcttca acacctggga atgctactaa
2281 gcctggtaat ggtggaaggg aggttgacag aactagttgc cgcctttttg gtttttcctt
2341 gaccgagaag attatcccaa cagacaaaga tggtgaaaag gaagtgagtt atgaaactga
2401 ttgccaaaat ccacggatgc tagacttgtt tgggtacaat tgcagtacgc ctggtgctct
2461 tcatgccctt tgtgctgctc ctttgggaat atgatgctac ttgagtaact gggagggata
2521 cgtacatgtg gagacgcagc cactccacgc ttcatcccag atgtaaacgg catcggtctg
2581 gttatggtcc caccgttcct gatgctttgc atgtaggtat tgctgcctca cgcctgaata
2641 cctacgtgcg gtcaggcgaa taaagcgact cgattgtatg tttgactgca gctctagctg
2701 tcgagtcgga agggcgatga tgtttatcgt cgttaatgta ccatcggcac cctgtttatg
2761 cagaaatgtg gacctaatta ttatgaactt atttccttag ttctatgtat ggttagcttc
2821 tgatctagac ctagttatga gcctatttca gaagtgctat gtatggtttg cttgtcaaca
2881 tttgtttctg tatcggtaca aatcactatg tttgtatgtt tattatgcac ttcttttgtg
2941 tttt
//