LOCUS AK072308 2452 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023021C21, full insert
sequence.
ACCESSION AK072308
VERSION AK072308.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2452)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2452
/clone="J023021C21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 238..2208
/db_xref="Osa1:LOC_Os02g53680"
/db_xref="RAP-DB:Os02g0776800"
/note="(RAP Annotation release2) Replication protein A
70kDa"
/note="(Rice Genome Annotation Project) replication
protein A 70 kDa DNA-binding subunit, putative, expressed"
/note="mapping to R02-TIGRv4S1-001465R (Chr.2: short
arm=32827102, long arm=32830612, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92916.1"
/translation="MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGE
RFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLE
VLVSECEIIGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLF
QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALN
PYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEV
VEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPI
NEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDF
CNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQW
FDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKN
ESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTA
WVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDER
KVKNTAVKVEKVDPSGESKFLLDLISKSSALH"
BASE COUNT 636 a 569 c 644 g 603 t
ORIGIN
1 gatcaaccgc ctctctcatt aattagcgga ccatttctaa ttcacccctc gcatcttttc
61 gaattttcga gagctcaaag cctcgaacca ttcccttctt cctcgtccca atccaagttc
121 caaccatcca gggcgggggt tttcccgtta atccgcgcct ctccgtgtcg gattgaattg
181 aagcggagag ggggaggagg aggtggaggt ggaggtggag gagggcggcg ggtggcgatg
241 gcgatggcga ggctgacgcc gaacggcgtg gcggcggcgc tggcggggga cacgaacctg
301 aagccggtgc tgcagatcgt cgagctgcgg ggcgtccagg tcaacggcgc gggcgtcacg
361 cgcggggaga ggttccgggc ggtggtctcc gacggcaccg ccgcgtcctc cgcgctcttc
421 gccgcgcagc tcagcgacca cgcccgatcc ggcgccctcc gacgcggcag cattgtgcag
481 ctcagcgagt acgtcatcaa cgaagtcggc cccagaagga ttattgtcat tctgaacctg
541 gaagttcttg tttcggagtg tgagataatt gggaatccta cagcgctttc agaaactgga
601 tctcctatcc caaatccgac aagagtagag caatttaacg gagcacctca atatggtttg
661 atggcaggga actcatcaaa tacaaccaca aagcctagtg acaatgttcc attgttccaa
721 aattcgatgg caggaaactc ctctaacttt gccactaggc ccagtgacaa agttccggtc
781 ttccaaccaa cagtccagcc atcttatcgc cctgcaccta attacaaaaa ccatggagca
841 atcatgaaaa atgaagcccc tgctagaata atccccatat ctgctttaaa tccttatcaa
901 ggccgctggg ctatcaaggc tagagttact gccaagggag atatccgccg ataccataat
961 gctaaaggtg atgggaaagt attctctttt gacttgcttg attctgatgg gggagagata
1021 cgggtgacat gcttcaatgc tcttcttgat cgattctatg aagttgtgga agttggtaag
1081 gtctatgtgg tatcaagagg aaacttgaga cctgcacaga agaactataa ccatcttaac
1141 aatgagtggg agattttatt ggagaatgga tcaactgtgg atctttgtcc tgatgagaac
1201 agttccattc ccacccagcg gtttgacttc agaccgatca atgaaattga ggatgcccag
1261 aacaatgcta tccttgacat cataggtgtt gttacatcgg tcaatccttg caccacaata
1321 cagaggaaaa atggcatgga aactcagaaa agaactatga acctgaagga tatgtctggt
1381 cgaagtgttg aggtaaccat gtggggtgac ttttgcaaca gagaaggctc acagcttcaa
1441 ggaatggttg aacgtgggat ctttcctgtg ctggctgtca aagcaggaaa agtgagtgat
1501 ttcagtggca agtctgtcgg cacaatttct tcaactcagc tcttcatcaa ccctgattct
1561 gctgaagctc atagtctcag gcaatggttt gatagtggag gaagagatgc ttctactcag
1621 tccatatcca gagatatcac gcctggagca tcaaggaatg agatccgaaa gacagtagca
1681 cagatcaagg atgaaggtct tggaatgggg gacaaacctg actggattac ggtgaaagcc
1741 accgttatat tcttcaagaa tgagtccttc ttctacacag cttgccctaa catgattggc
1801 gacaggcagt gcaataagaa ggtgacaaag agtactaatg gcaattggac ctgtgacaaa
1861 tgcgataggg agtttgaaga gtgcgactac aggtatctcc tgcagtttca gattcaagat
1921 cactcgggaa cagcttgggt gacagcattc caggaggctg ggcaggagtt gcttggctgc
1981 tcggcaacag agctcaacgc acttaaggag cgcgaggacc ctcggtttgc agacaccatg
2041 ctcaattgct tgtttcagga atatctgctc aggctgaagg tcaaagaaga atcatacggc
2101 gatgagcgca aagtgaagaa caccgcggtc aaagtggaga aggttgatcc ttcgggtgaa
2161 agtaaatttc tgctggattt gatctccaag tcctcggcgc tacattagca gactgtgcta
2221 ctctatcagc tgctcgctcg tgcgtggtga ggtgagcgag gtgaggtgtt gcagtgccca
2281 tagccctcgc cctcctgctc gatttttgtg ccggtacttt aatattaacg ccacttaata
2341 gtttatatcc agattagtgc tttaatagtt tatatccaga ttagtgctga tatttccatt
2401 tttgtgccgg tactttaata ttaacgccac ttaatgtatc agcttttata cc
//