LOCUS AK072244 3941 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023003F07, full insert
sequence.
ACCESSION AK072244
VERSION AK072244.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3941)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3941
/clone="J023003F07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 362..3382
/db_xref="Osa1:LOC_Os05g33610"
/db_xref="RAP-DB:Os05g0405900"
/note="(RAP Annotation release2) WD40-like domain
containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R05-TIGRv4S1-000641F (Chr.5: short
arm=19685640, long arm=19691876, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG92887.1"
/translation="MRRGKGGRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASV
AASIAPQAEDEKDQVLWAGFDKLELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVS
KRDGPVTFLQMQPTPVYSDGTEGFRTSHPMLLVVAGDETNGSGMVQGGRLSALIRDNS
SETPNGNCISTPTVVRFYSLKSHSYVHVLRFRSAVYIVRCSPRIVAVALAAQVYCFDA
VTLENKFSVLTYPLQGAPGINIGYGPMAVGPRWLAYASNSPLLSSTGRLSPQNLTPSP
GVSPSTSPSSGSLVARYAMESSKQIAAGIINLGDMGYKTLSKYCQEFLPDGSGSPLSS
SPGRRSGKLPSSVHPLEADNAGMVVIKDFISKEIISQFRAHTSPISALCFDPSGTLLV
TASVHGHNINVFRIMPTVIANSSGSIRYDWTASHVHLYKLYRGMTAAVIQDISFSHFS
QWISIVSSRGTCHIFTLSPFGGDASLLPQNSHSDGLPLAPCQSRPWWSKPSFLMDHQL
HPAPSTVTNSVVSRIKNSSSGWLNTVSNVAASASGKLSVPSGAVTAVFHNSNYEGSLP
VPSKANAMEHLLVYSPSGHVIQHELLPSGSESSDSSPIVGPGSLQIQDDELHVTAEPT
QWWDVCRRTNWPERDENIANIVFHNQRNSMMAMDASDCDSEHSDSVPSDGISGKEMMR
SRERSSWYLSNAEVQISSWRIPIWQKSKIFFYVIDQPPAKSGESLSSSGGEIEIEKLP
LHEVELRRRELLPVFKQFHYSEQNFSDRFRNLAIGRFQNALTYIDKDNGAHGSKAGFP
ISGFYSDMRKMQNMNGLEGQLLLEPITNDLQPMEKCNSVQSPKVANFTALHNVDNESM
NHVSTATGATTSVTTVDTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFRPQITNNSS
VSNGTMTDISNGCLTSINSGQNEASDSHNSVEFTQYFQEGYCKISELDDCRELTEAVT
DADSSSSHCEREKPEEDGDNDDMLGAVFAFSEEG"
BASE COUNT 1023 a 830 c 1019 g 1069 t
ORIGIN
1 gaggcacacg aaagcaacag cgaggagggg agagagagag agagagagag agagaggaaa
61 agggagaagc caaggagttg ttggttctgg tcggagtcgg aggaggagga ggaggaggag
121 ggagatggtg gcgagctgac ttggcggatc gcggcggcgg cggcggggga tcggaggggg
181 agcagggcca ctcggatggt attgggcttc gccggcgccg gaggcggcga tcgcggatgg
241 gcggcgggcg gggcgggggc cgggggttgt aggtggagga ggaggagggg cggttccgga
301 gtttggggag ggggcggcgg tgctcgtgct gggggaggag tggggaggag gaggaggagg
361 gatgaggcgc gggaagggcg ggaggaacgg gctgctgccg agctcgctga ggatcatctc
421 gtcgtgcctc aagacggtgt cgtccaacgc cggctccgtc gcgtccacgg tgcgctcggc
481 cggcgcctcc gtcgccgcct ccatcgcccc ccaggccgag gacgagaagg accaggtatt
541 gtgggctgga tttgataaat tagagcttca tccatcatct ttcaagcatg ttttgcttgt
601 tggttattca aatgggttcc aagtgcttga tgttgaggat gctgcaaatg tttgcgaatt
661 ggtctcaaaa cgtgatggtc cagttacatt tttacaaatg caacccacac cagtttactc
721 tgatggtact gaaggattca gaacatcaca tcccatgctt ctggttgttg ccggtgatga
781 gacaaatggg tcgggtatgg ttcaaggtgg tcgcttaagt gcactgatca gagataatag
841 cagtgaaact ccaaatggaa attgcatttc tactccaaca gttgttcgct tctactcttt
901 gaagtctcac tcatatgtac atgttctgag atttcggtct gccgtatata tagttcgctg
961 cagcccccgg attgtagctg tagctcttgc agcacaagta tactgctttg atgctgtgac
1021 ccttgagaat aagttcagtg tcttgacata tcctttgcaa ggggcacctg ggataaatat
1081 tgggtatggc ccaatggctg ttggcccaag gtggttagct tatgcttcca atagcccttt
1141 attatcaagc acaggccgtc taagtccaca gaaccttaca ccatctccag gagttagccc
1201 atctacctcc cctagtagtg gaagtttagt tgctcggtat gcaatggaat caagtaagca
1261 gatagctgct ggtattatta atcttggtga tatgggatac aagacactgt caaagtactg
1321 ccaagaattt ctgccagatg gttctggctc ccccttgtca tcaagtcctg gcagaagatc
1381 tggcaaactt ccctctagcg tgcatccgct ggaagctgac aatgctggaa tggttgtcat
1441 caaggatttt atctcgaaag aaatcatatc tcagtttagg gctcacacaa gtcccatatc
1501 tgctctttgt tttgacccta gtggaactct gttggtcaca gcctccgttc atggccataa
1561 cataaatgtt ttcaggatca tgccaaccgt aatagctaac agctcaggct ctatacgcta
1621 tgattggaca gcatctcatg tccaccttta caaactgtat cgtggcatga cagcagctgt
1681 catccaggat atctctttta gccattttag ccagtggata tctattgttt catcccgagg
1741 tacttgccat atttttacat tgtctccttt tggcggtgat gcgagtctgc tgccacagaa
1801 ttctcacagt gatgggctac cccttgcccc atgtcaatca aggccatggt ggtcaaagcc
1861 atcattcctt atggatcatc agcttcatcc agctccttca actgtaacta attctgtagt
1921 cagtaggata aaaaacagtt cttctggttg gctaaatact gttagtaatg tggctgcttc
1981 tgcaagtggg aaactatctg taccatctgg cgctgttact gctgttttcc acaattccaa
2041 ctatgaaggt tcattgccag ttccatcaaa ggctaatgcc atggagcatc tattggtgta
2101 ttcaccatct ggccatgtta ttcaacatga actactgcct tcaggttctg aatcctctga
2161 tagcagtcca atagttgggc ctggttcctt gcagatccaa gatgatgagt tgcatgttac
2221 tgctgaaccg actcagtggt gggatgtatg ccgtaggaca aactggccag aaagggacga
2281 aaacattgca aacatagtct tccataatca acgaaatagt atgatggcaa tggatgcttc
2341 tgactgtgat agtgagcatt cagattccgt tccatcagat ggtatttctg ggaaagagat
2401 gatgagatct cgagaaagat caagttggta cctctcaaat gcagaggtac agataagttc
2461 atggaggatt cccatttggc agaaatcaaa gattttcttc tatgtgatag atcaaccacc
2521 tgcaaaatca ggggaatctc ttagctctag tgggggagag attgagattg agaagctgcc
2581 tctgcatgag gttgaacttc ggaggaggga attgctccct gtattcaagc agttccacta
2641 ttctgaacag aacttcagtg acagattcag gaatcttgca ataggacggt ttcagaatgc
2701 attgacatac atcgacaagg ataatggtgc tcatggatcc aaggcggggt tccctatatc
2761 tggattttac agtgatatga ggaaaatgca gaacatgaat ggtttagagg ggcagttatt
2821 gttggaacct atcactaatg atttacaacc aatggaaaaa tgcaattctg ttcaatctcc
2881 taaagtggca aattttactg cccttcacaa tgtagataat gagagcatga accatgtttc
2941 aacagcaact ggagcaacca catcagtcac aacagtggac actttacctt caaccatcag
3001 accattgagc agctactccc tcttggatgg atctcttgat gatggattac catcacctgc
3061 aagtaatgta tcattcaggc ctcagataac caacaattct tcagtaagca atggtacaat
3121 gactgacatc tcaaatgggt gtctcacgag catcaattct ggacagaatg aagcatctga
3181 ttctcacaac tcagtggagt ttacccagta tttccaagag ggctattgta aaatatcaga
3241 actcgatgac tgccgtgagt taactgaagc tgttactgat gctgacagca gcagcagcca
3301 ctgcgagaga gagaagcccg aggaagatgg ggataacgat gacatgcttg gggctgtttt
3361 tgccttcagc gaagaaggtt gaacctaata atatactctg cttttacata gagaatggaa
3421 aacagtgccc gtgatattac ctagaaaatg gtggatttcc attaggcttt cgtggaataa
3481 attggtgctg agatgataat ctactatttg gtacatatta gaaaggtgaa gcttgtgctc
3541 gatatccatt tgtgagaagt tttactcagg aattgagatc aagatccttc cttccgggcc
3601 attaactaat ccacggatcc acgttaaggg gagcttggtg ttgtcgagaa gttgctgctg
3661 cctgccgcaa cactgcccct tttccgttgc tttgtacata ctgtaaaaga ccatttgttt
3721 tgtgaaatac gtctctggaa cattggacgg tccaacttcc ttggcagcca tatttgttga
3781 ctgcttcctg ccaaggcctg ttaatgttcc ttgtttattt gtacagtctt ttctgtttca
3841 ttaaggaaaa agaaaatcta gcaaggatta atgtgacata actgtataaa cattcagtaa
3901 agaatttccg tttacgaaga aatgttaatt gtttcccttg c
//