LOCUS       AK072140                3637 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013122D02, full insert
            sequence.
ACCESSION   AK072140
VERSION     AK072140.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..3637
                     /clone="J013122D02"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..3637
                     /db_xref="Osa1:LOC_Os04g55230"
                     /db_xref="RAP-DB:Os04g0645100"
                     /note="(RAP Annotation release2) Tetratricopeptide-like
                     helical domain containing protein"
                     /note="(Rice Genome Annotation Project) ataxin-2
                     C-terminal region family protein, expressed"
                     /note="mapping to R04-TIGRv4S1-001118F (Chr.4: short
                     arm=32616208, long arm=32627452, direction=forward) for
                     TIGR Pseudomol ver4"
BASE COUNT         1041 a          791 c          927 g          878 t
ORIGIN      
        1 gatttgtggc tgttgggttt ggagcttcag gcgcaatggc ccccaagggc gccggccgtg
       61 gcaagggcag gggcggcggc ggcggcggca aaggcgacaa gaggaagaag gaagagaaag
      121 ttgtgccgag tgccatagac gtcacggttg tcactcccta tgaatcccag gttacactca
      181 aggggatatc tacggaccgt gttctggacg tgaggaagct gctgggctcg aatgtggaga
      241 cgtgccacct gacaaactac tcgctctcgc acgtgacgcg agggcagcgg ctggaggacg
      301 gcgtggaaat cgtgtcgctg aaaccatgct ctctcaccat cgtggaagag gagtacgcga
      361 cggaggcggc ggcggcggcg caagtccggc ggctgctgga catcgtcgcc tgcaccaccg
      421 cgttcgtgaa caagccccgc gacggcgcca agcacaagtc gtccaagcac gcgcgcccgg
      481 cgacgccgcc gtcaccgccc gcgctcgccg cctcccccga cgcccatggc gccggcgccg
      541 cccaggcgcc gccgatatcg gaggcgcacg acatggcggc catccgtccg ccgcccaggc
      601 tgggcgagtt ctacgacttc ctctccttcg cccacctcac cccgcccgtc cactttatca
      661 ggaggaagga gagcaatggc gcttctcagg aaggcgacta cttcgaaatc gaggtgaaag
      721 tttgcaatgg gaagctcctg cacatcgttg cttccgtcaa gggcttctat tcggcaggga
      781 agccgcacac cgtgagccac tccttggtgg atctgttgca acagctcagc agtgcatttg
      841 ccaatgcata tgatgcactg atgaaagctt ttctggatca caacaagttt gggaatctac
      901 catacggatt tcgtgcaaac acatggctta ttcctcctat atacttggat tctgctacaa
      961 agtgcccagc attaccagtt gaggatgaga attggggtgg aaacgggggt ggcaatgggc
     1021 gagatggaaa gtatgacaga agacgatggg caaaagaatt ttctactttg gctagaatgc
     1081 catgcaaaac tgaggaaggg agggtgatca gagaccggaa ggcttttctt ttacacaatc
     1141 tctttgtaga tacagcaatt tttagagctg catcaacaat acagagactc attgatctgt
     1201 ctgggaactc aactagtcaa caagctggcc tagatggttc tttagcaatc gaggaacgtg
     1261 ttggtgactt gcttataact gtaaagaggg atcaggctga tgctagttta aagctggagg
     1321 ataaagttga tggagttgca ctctatcaaa ccggttctat ggatatatca caaagaaatc
     1381 ttctaaaagg tttaacttct gatgaaagtg tcgttgttaa ggacacctca atactcggag
     1441 tggttattgt taaacattgt ggatatacag caacagtgaa ggtttcaggg cgcacaaagg
     1501 acggaaatgg tggcaaacaa accagtgata tctgtgatca tctcgatgga atttcgaatg
     1561 ttgatgtaga tgatttgcca gatggaggtt ctaatgcctt gaacattaac agtctaagaa
     1621 tatcactgcc aaaaattgtc aactcagaca tcgctagtac tcagtgtcct actccgcagt
     1681 ctcatgttga taatcatgca aggaaactag tgcgcaaaat acttgaagat agcttgatga
     1741 agctggagaa catgcctgcc aataatccta gaaccatcag atgggaactt gggtcatcct
     1801 ggctgcaaaa cttgcagaaa aaggattcgc cggcatctga ggacaagaaa aatgcaggac
     1861 atgttgaaaa agagacaact atcaaaggtc ttggtaagca ctttgaacag ctaaagaaaa
     1921 ttaaaaagaa agaatgccat gttgaaggtg ctatgtctga gaaggaagac tctgacagta
     1981 actgctctgt cataaatggc atggaagaat ctgaaaacac caaggagact gatattagca
     2041 agctgatgtc agaggatgat ttctgtcgcc ttaaggatct gggagctgga cttcatcaaa
     2101 agtcccttga agagctcact atgatggccc ataaattcta tgatgatact gcgcttccaa
     2161 agctggtggc tgattttgct tcccttgaac tttctcctgt ggatggaaga accatgaccg
     2221 atttcatgca cacaaggggt cttaatatgt gctccttagg ccgtgtggta gagctcgcgg
     2281 agaagcttcc acatatccag tcaatttgca tccatgaaat ggtcattagg tcctttaagc
     2341 acattgttcg agctgttatt gcagctgttg atgacatgca aaatatgtct gcagctattg
     2401 ctgagacttt aaacatttta cttggatgcc caagacttga aagtggcact gaaacagatg
     2461 cacatagtga acataatttg agatttagat gggtagagag gttcctttct aaaaggtaca
     2521 attggaaatt gaaagatgaa tttgcacact tgcggaaatt tatcattctg agaggtcttt
     2581 gcagtaaggt tggacttgag ttggttgcga gagattatga tatgaatagc ccaaatccat
     2641 ttgacaaatc tgacatagtt aacattattc ctgtatgcaa gcatgtggtg tactcttcta
     2701 ttgatggtcg aaacttatta gaatcatcaa agatggcttt ggataaagga aaacttgatg
     2761 atgccgtcaa cttcggaaca aaggcgttgt ccaaaattgt agcagtttgt ggtccatacc
     2821 atcggctgac tgctaatgcg tacagtcttc ttgctgtagt tctttaccat actggagatt
     2881 ttaatcaggc aactatatat cagcagaagg cacttgatat caatgaaaga gagctaggtc
     2941 ttgaccaccc agaaactatg aagagttacg gggatttatc tgtcttctac taccgtctcc
     3001 agcacatcga aatggctcta aagtatgtca accgtgcact atatctactc caattttctt
     3061 gtgggctttc acatccaaat tcagctgcca catacataaa tgtggctatg atggaagaag
     3121 gtatgggaaa tgttcatgtc gctctcaggt acttgcatga agcactgaag tgcaacaaga
     3181 gactgctagg agctgatcac attcagactg ctgcgagcta tcatgccata gccatagccc
     3241 tctcaatgat ggatgcatac tccttgagtg ttcagcatga acagaccacc ttacagatac
     3301 ttcaggagaa actaggacaa gatgaccttc gaactcagga tgctgctgca tggcttgagt
     3361 attttgagtc aaaagcatta gaacaacaag aggccgcccg aaggggcatc ccaaaacctg
     3421 actcatctat tgcaagcaaa ggacatctta gtgtatcaga tctacttgac tacataagcc
     3481 cggatcagga aagaaaagag agggatacac aaagaaaggg caggcgtgca aagaataata
     3541 tcagagccca tcaaggtgaa ttagttgaag aaaaggagag ctttgagcac gacataggat
     3601 ctcctcatga agcaaacaaa gaggagtttc aacaagt
//