LOCUS AK072140 3637 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013122D02, full insert sequence. ACCESSION AK072140 VERSION AK072140.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3637) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3637 /clone="J013122D02" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..3637 /db_xref="Osa1:LOC_Os04g55230" /db_xref="RAP-DB:Os04g0645100" /note="(RAP Annotation release2) Tetratricopeptide-like helical domain containing protein" /note="(Rice Genome Annotation Project) ataxin-2 C-terminal region family protein, expressed" /note="mapping to R04-TIGRv4S1-001118F (Chr.4: short arm=32616208, long arm=32627452, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 1041 a 791 c 927 g 878 t ORIGIN 1 gatttgtggc tgttgggttt ggagcttcag gcgcaatggc ccccaagggc gccggccgtg 61 gcaagggcag gggcggcggc ggcggcggca aaggcgacaa gaggaagaag gaagagaaag 121 ttgtgccgag tgccatagac gtcacggttg tcactcccta tgaatcccag gttacactca 181 aggggatatc tacggaccgt gttctggacg tgaggaagct gctgggctcg aatgtggaga 241 cgtgccacct gacaaactac tcgctctcgc acgtgacgcg agggcagcgg ctggaggacg 301 gcgtggaaat cgtgtcgctg aaaccatgct ctctcaccat cgtggaagag gagtacgcga 361 cggaggcggc ggcggcggcg caagtccggc ggctgctgga catcgtcgcc tgcaccaccg 421 cgttcgtgaa caagccccgc gacggcgcca agcacaagtc gtccaagcac gcgcgcccgg 481 cgacgccgcc gtcaccgccc gcgctcgccg cctcccccga cgcccatggc gccggcgccg 541 cccaggcgcc gccgatatcg gaggcgcacg acatggcggc catccgtccg ccgcccaggc 601 tgggcgagtt ctacgacttc ctctccttcg cccacctcac cccgcccgtc cactttatca 661 ggaggaagga gagcaatggc gcttctcagg aaggcgacta cttcgaaatc gaggtgaaag 721 tttgcaatgg gaagctcctg cacatcgttg cttccgtcaa gggcttctat tcggcaggga 781 agccgcacac cgtgagccac tccttggtgg atctgttgca acagctcagc agtgcatttg 841 ccaatgcata tgatgcactg atgaaagctt ttctggatca caacaagttt gggaatctac 901 catacggatt tcgtgcaaac acatggctta ttcctcctat atacttggat tctgctacaa 961 agtgcccagc attaccagtt gaggatgaga attggggtgg aaacgggggt ggcaatgggc 1021 gagatggaaa gtatgacaga agacgatggg caaaagaatt ttctactttg gctagaatgc 1081 catgcaaaac tgaggaaggg agggtgatca gagaccggaa ggcttttctt ttacacaatc 1141 tctttgtaga tacagcaatt tttagagctg catcaacaat acagagactc attgatctgt 1201 ctgggaactc aactagtcaa caagctggcc tagatggttc tttagcaatc gaggaacgtg 1261 ttggtgactt gcttataact gtaaagaggg atcaggctga tgctagttta aagctggagg 1321 ataaagttga tggagttgca ctctatcaaa ccggttctat ggatatatca caaagaaatc 1381 ttctaaaagg tttaacttct gatgaaagtg tcgttgttaa ggacacctca atactcggag 1441 tggttattgt taaacattgt ggatatacag caacagtgaa ggtttcaggg cgcacaaagg 1501 acggaaatgg tggcaaacaa accagtgata tctgtgatca tctcgatgga atttcgaatg 1561 ttgatgtaga tgatttgcca gatggaggtt ctaatgcctt gaacattaac agtctaagaa 1621 tatcactgcc aaaaattgtc aactcagaca tcgctagtac tcagtgtcct actccgcagt 1681 ctcatgttga taatcatgca aggaaactag tgcgcaaaat acttgaagat agcttgatga 1741 agctggagaa catgcctgcc aataatccta gaaccatcag atgggaactt gggtcatcct 1801 ggctgcaaaa cttgcagaaa aaggattcgc cggcatctga ggacaagaaa aatgcaggac 1861 atgttgaaaa agagacaact atcaaaggtc ttggtaagca ctttgaacag ctaaagaaaa 1921 ttaaaaagaa agaatgccat gttgaaggtg ctatgtctga gaaggaagac tctgacagta 1981 actgctctgt cataaatggc atggaagaat ctgaaaacac caaggagact gatattagca 2041 agctgatgtc agaggatgat ttctgtcgcc ttaaggatct gggagctgga cttcatcaaa 2101 agtcccttga agagctcact atgatggccc ataaattcta tgatgatact gcgcttccaa 2161 agctggtggc tgattttgct tcccttgaac tttctcctgt ggatggaaga accatgaccg 2221 atttcatgca cacaaggggt cttaatatgt gctccttagg ccgtgtggta gagctcgcgg 2281 agaagcttcc acatatccag tcaatttgca tccatgaaat ggtcattagg tcctttaagc 2341 acattgttcg agctgttatt gcagctgttg atgacatgca aaatatgtct gcagctattg 2401 ctgagacttt aaacatttta cttggatgcc caagacttga aagtggcact gaaacagatg 2461 cacatagtga acataatttg agatttagat gggtagagag gttcctttct aaaaggtaca 2521 attggaaatt gaaagatgaa tttgcacact tgcggaaatt tatcattctg agaggtcttt 2581 gcagtaaggt tggacttgag ttggttgcga gagattatga tatgaatagc ccaaatccat 2641 ttgacaaatc tgacatagtt aacattattc ctgtatgcaa gcatgtggtg tactcttcta 2701 ttgatggtcg aaacttatta gaatcatcaa agatggcttt ggataaagga aaacttgatg 2761 atgccgtcaa cttcggaaca aaggcgttgt ccaaaattgt agcagtttgt ggtccatacc 2821 atcggctgac tgctaatgcg tacagtcttc ttgctgtagt tctttaccat actggagatt 2881 ttaatcaggc aactatatat cagcagaagg cacttgatat caatgaaaga gagctaggtc 2941 ttgaccaccc agaaactatg aagagttacg gggatttatc tgtcttctac taccgtctcc 3001 agcacatcga aatggctcta aagtatgtca accgtgcact atatctactc caattttctt 3061 gtgggctttc acatccaaat tcagctgcca catacataaa tgtggctatg atggaagaag 3121 gtatgggaaa tgttcatgtc gctctcaggt acttgcatga agcactgaag tgcaacaaga 3181 gactgctagg agctgatcac attcagactg ctgcgagcta tcatgccata gccatagccc 3241 tctcaatgat ggatgcatac tccttgagtg ttcagcatga acagaccacc ttacagatac 3301 ttcaggagaa actaggacaa gatgaccttc gaactcagga tgctgctgca tggcttgagt 3361 attttgagtc aaaagcatta gaacaacaag aggccgcccg aaggggcatc ccaaaacctg 3421 actcatctat tgcaagcaaa ggacatctta gtgtatcaga tctacttgac tacataagcc 3481 cggatcagga aagaaaagag agggatacac aaagaaaggg caggcgtgca aagaataata 3541 tcagagccca tcaaggtgaa ttagttgaag aaaaggagag ctttgagcac gacataggat 3601 ctcctcatga agcaaacaaa gaggagtttc aacaagt //