LOCUS AK071926 3448 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013072F24, full insert sequence. ACCESSION AK071926 VERSION AK071926.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3448) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3448 /clone="J013072F24" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 146..3247 /db_xref="Osa1:LOC_Os12g18360" /db_xref="RAP-DB:Os12g0281300" /note="(RAP Annotation release2) Similar to Pi-ta protein" /note="(Rice Genome Annotation Project) RGH2A, putative, expressed" /note="mapping to R12-TIGRv4S1-000392R (Chr.12: short arm=10603771, long arm=10609327, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG92756.1" /translation="MAPAVSASQGVIMRSLTSKLDSLLLQPPEPPPPAQPSSLRKGER KKILLLRGDLRHLLDDYYLLVEPPSDTAPPPDSTAACWAKEVRELSYDVDDFLDELTT QLLHHRGGGDGSSTAGAKKMISSMIARLRGELNRRRWIADEVTLFSARVKEAIRRQES YHLGRRTSSSRPREEVDDDDREDSAGNERRRFLSLTFGMDDAAVHGQLVGRDISMQKL VRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMT KILTDMLSQLRPQHQHQSSDVWEVDRLLETIRTHLQDKRYFIIIEDLWASSMWDIVSR GLPDNNSCSRILITTEIEPVALACCGYNSEHIIKIDPLGDDVSSQLFFSGVVGQGNEF PGHLTEVSHDMIKKCGGLPLAITITARHFKSQLLDGMQQWNHIQKSLTTSNLKKNPTL QGMRQVLNLIYNNLPHCLKACLLYLSIYKEDYIIRKANLVRQWMAEGFINSIENKVME EVAGNYFDELVGRGLVQPVDVNCKNEVLSCVVHHMVLNFIRCKSIEENFSITLDHSQT TVRHADKVRRLSLHFSNAHDTTPLAGLRLSQVRSMAFFGQVKCMPSIADYRLLRVLIL CFWADQEKTSYDLTSISELLQLRYLKITGNITVKLPEKIQGLQHLQTLEADARATAVL LDIVHTQCLLHLRLVLLDLLPHCHRYIFTSIPKWTGKLNNLRILNIAVMQISQDDLDT LKGLGSLTALSLLVRTAPAQRIVAANEGFGSLKYFMFVCTAPCMTFVEGAMPSVQRLN LRFNANEFKQYDSKETGLEHLVALAEISARIGGTDDDESNKTEVESALRTAIRKHPTP STLMVDIQWVDWIFGAEGRDLDEDLAQQDDHGFCMLPESSSRLQSREISIEEDMPTGA EGTVIVPHTMEQFALHMSQAKQSHKLVVIQFTTSRCPASRYIAPAFTEYAKEFAGAVF IKVNVDSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGANKELLRAKIRRHTASPY FLR" BASE COUNT 898 a 799 c 869 g 882 t ORIGIN 1 gagataggat taagtttcaa gagttaattt cttgtactct tgggcgatcc atgctgtcaa 61 atcagcaact aacgaggcat aatctcgatc actagctctg atctgatctt cagctagcgc 121 cggcgagctg cagaggtctc catccatggc gccggcggtc agtgcatcgc agggtgtcat 181 catgcggtcc ctgacgagca agctcgactc gctgctgctg cagccgccgg agccgccgcc 241 gcctgcgcaa ccgtcgtcgc tgcggaaggg ggagaggaag aagatcctcc tcctcagagg 301 cgatctccga cacctgctag atgactacta cctcctcgtg gagccgccgt cagacaccgc 361 gccaccgcca gactcgacgg cggcgtgctg ggctaaggag gttcgcgagc tctcctacga 421 cgtcgacgac ttcctcgacg agctaacgac ccagctcctc caccaccgcg gcggcggcga 481 tggcagtagc actgctggtg ccaagaagat gatcagcagc atgatcgccc ggcttcgagg 541 ggagcttaac cggcggcggt ggatcgccga cgaggtcacc ctgttcagcg cccgcgtgaa 601 ggaggccatt cgccgccagg agagctacca tcttggcagg cgcacctcga gctcgaggcc 661 gagagaagaa gtcgacgacg acgatcgcga ggactccgcc ggcaacgaac gccgccggtt 721 tctgtcgctg acgttcggga tggacgacgc tgctgtgcac ggccagctcg ttggtaggga 781 tatttcgatg caaaagctcg tccggtggct ggccgacggc gagccgaagc tcaaggtggc 841 ttccattgtt ggatccggag gtgttggcaa gacgacgctg gccacagaat tctatcgtct 901 gcatggccgg cggttggatg cgccgttcga ctgccgggct ttcgtgcgga cgccccggaa 961 gcctgacatg acgaagatcc tcaccgacat gctgtcacag ctgcggccac aacatcagca 1021 tcagtcttcg gatgtttggg aggttgatcg actccttgaa actatccgga cgcatttgca 1081 agataaaagg tacttcatca taattgaaga tttatgggct tcatcaatgt gggatattgt 1141 tagccgtggt ttgcctgata ataatagttg cagtagaata ctaataacaa cagaaattga 1201 acctgtagct ttggcatgct gtggatataa ctcagagcac attattaaga ttgatccact 1261 gggtgatgat gtctcaagtc aattgttttt cagtggagtt gttggccaag gaaatgaatt 1321 tcctggacat cttactgaag tttctcatga catgataaaa aaatgtggtg gcttgccact 1381 agcaataact ataacagcca gacattttaa aagccagctg ttagatggaa tgcagcaatg 1441 gaatcacata caaaaatcat tgactacttc caatttgaag aaaaatccta ctttgcaggg 1501 gatgaggcaa gtactcaacc ttatttacaa taatcttcct cattgtttga aagcatgtct 1561 gttatacctt agcatctaca aagaggacta cataattagg aaggccaact tggtgaggca 1621 atggatggct gaaggtttca tcaattccat agaaaataaa gtcatggaag aagttgcagg 1681 gaactatttt gatgaacttg ttggtagggg cctggtccaa ccagtagatg ttaactgcaa 1741 aaatgaggta ttgtcatgtg tagtgcacca catggtatta aatttcatca ggtgtaagtc 1801 aatagaggag aatttcagca ttacattgga tcattctcag acgacagtaa gacatgctga 1861 caaggttcgc cgactctcgc ttcacttcag caatgcacat gatacaacac cactagcagg 1921 tttgagactc tcacaagttc gatcgatggc atttttcgga caagtcaagt gtatgccttc 1981 cattgcagat tataggcttc ttcgagttct gattctttgt ttttgggctg atcaagagaa 2041 aacaagctat gacctcacaa gcatttctga actgttacaa ctgagatatc tgaagataac 2101 aggtaatatc acagttaaac ttccagagaa gatccaagga ctacaacact tgcagacact 2161 ggaagcagat gcaagagcaa ctgctgtcct attggatatt gttcatacac agtgtttgtt 2221 gcaccttcgt cttgtactac ttgatctgct ccctcactgt cacaggtaca tcttcaccag 2281 catccccaaa tggactggaa agctcaacaa tctccgcatt ttaaacattg cagtcatgca 2341 aatttcccag gatgaccttg acactctcaa aggactggga tctctcactg ctctttcgct 2401 gcttgttcga acagcgcctg cgcaaagaat cgtcgctgcg aatgaggggt tcgggtctct 2461 caagtacttc atgtttgtct gtacagcacc atgcatgact tttgtggaag gagcaatgcc 2521 gagtgtgcaa agattaaatc taaggttcaa tgccaacgag ttcaagcagt atgactctaa 2581 ggagacaggg ttggaacact tggtcgccct tgcagagatc tctgcaagaa ttgggggcac 2641 tgatgatgat gaatcaaaca aaactgaagt ggagtctgcc ttgaggactg caattcgcaa 2701 gcatccgacg ccgagcactc ttatggttga tatacaatgg gtggattgga tctttggtgc 2761 tgaagggaga gacttggatg aagatttggc acaacaagat gatcacgggt tttgtatgct 2821 accggaatcc tcttcacgtc ttcagagtag agagataagt atcgaagaag acatgcccac 2881 cggtgcggaa gggacggtga ttgtgcccca cacaatggag cagttcgccc tccacatgag 2941 ccaagccaag caatcccaca agctcgtagt catccagttc actacttccc ggtgccctgc 3001 ttcacgctac atcgcgccag ctttcaccga gtatgcgaag gagttcgctg gtgcggtttt 3061 cattaaggtc aatgtcgaca gcgatgagct ggagagtgtt acggactggt atgacatcga 3121 agggatagtg ccaacatttt tcttcgtcaa ggatggggag aagattgaca agattcctgg 3181 tgctaacaag gagttgctcc gagccaaaat tcgaaggcac acagcttctc cttacttcct 3241 ccgttgataa tgacttcttt tatcgtcttt gtctagtata tatatggcac ttatatagtt 3301 aactaggaag ggcaccttgt ttaatgtagc tttcattttt attatgaatg ttaaggatga 3361 tattatattg ttgaagtatt tttttactcc ttgtaaacat gtattggtta ataacgaagt 3421 agtttggaca ttagttatga ttttcttc //