LOCUS       AK071926                3448 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013072F24, full insert
            sequence.
ACCESSION   AK071926
VERSION     AK071926.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3448)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..3448
                     /clone="J013072F24"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             146..3247
                     /db_xref="Osa1:LOC_Os12g18360"
                     /db_xref="RAP-DB:Os12g0281300"
                     /note="(RAP Annotation release2) Similar to Pi-ta protein"
                     /note="(Rice Genome Annotation Project) RGH2A, putative,
                     expressed"
                     /note="mapping to R12-TIGRv4S1-000392R (Chr.12: short
                     arm=10603771, long arm=10609327, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG92756.1"
                     /translation="MAPAVSASQGVIMRSLTSKLDSLLLQPPEPPPPAQPSSLRKGER
                     KKILLLRGDLRHLLDDYYLLVEPPSDTAPPPDSTAACWAKEVRELSYDVDDFLDELTT
                     QLLHHRGGGDGSSTAGAKKMISSMIARLRGELNRRRWIADEVTLFSARVKEAIRRQES
                     YHLGRRTSSSRPREEVDDDDREDSAGNERRRFLSLTFGMDDAAVHGQLVGRDISMQKL
                     VRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMT
                     KILTDMLSQLRPQHQHQSSDVWEVDRLLETIRTHLQDKRYFIIIEDLWASSMWDIVSR
                     GLPDNNSCSRILITTEIEPVALACCGYNSEHIIKIDPLGDDVSSQLFFSGVVGQGNEF
                     PGHLTEVSHDMIKKCGGLPLAITITARHFKSQLLDGMQQWNHIQKSLTTSNLKKNPTL
                     QGMRQVLNLIYNNLPHCLKACLLYLSIYKEDYIIRKANLVRQWMAEGFINSIENKVME
                     EVAGNYFDELVGRGLVQPVDVNCKNEVLSCVVHHMVLNFIRCKSIEENFSITLDHSQT
                     TVRHADKVRRLSLHFSNAHDTTPLAGLRLSQVRSMAFFGQVKCMPSIADYRLLRVLIL
                     CFWADQEKTSYDLTSISELLQLRYLKITGNITVKLPEKIQGLQHLQTLEADARATAVL
                     LDIVHTQCLLHLRLVLLDLLPHCHRYIFTSIPKWTGKLNNLRILNIAVMQISQDDLDT
                     LKGLGSLTALSLLVRTAPAQRIVAANEGFGSLKYFMFVCTAPCMTFVEGAMPSVQRLN
                     LRFNANEFKQYDSKETGLEHLVALAEISARIGGTDDDESNKTEVESALRTAIRKHPTP
                     STLMVDIQWVDWIFGAEGRDLDEDLAQQDDHGFCMLPESSSRLQSREISIEEDMPTGA
                     EGTVIVPHTMEQFALHMSQAKQSHKLVVIQFTTSRCPASRYIAPAFTEYAKEFAGAVF
                     IKVNVDSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGANKELLRAKIRRHTASPY
                     FLR"
BASE COUNT          898 a          799 c          869 g          882 t
ORIGIN      
        1 gagataggat taagtttcaa gagttaattt cttgtactct tgggcgatcc atgctgtcaa
       61 atcagcaact aacgaggcat aatctcgatc actagctctg atctgatctt cagctagcgc
      121 cggcgagctg cagaggtctc catccatggc gccggcggtc agtgcatcgc agggtgtcat
      181 catgcggtcc ctgacgagca agctcgactc gctgctgctg cagccgccgg agccgccgcc
      241 gcctgcgcaa ccgtcgtcgc tgcggaaggg ggagaggaag aagatcctcc tcctcagagg
      301 cgatctccga cacctgctag atgactacta cctcctcgtg gagccgccgt cagacaccgc
      361 gccaccgcca gactcgacgg cggcgtgctg ggctaaggag gttcgcgagc tctcctacga
      421 cgtcgacgac ttcctcgacg agctaacgac ccagctcctc caccaccgcg gcggcggcga
      481 tggcagtagc actgctggtg ccaagaagat gatcagcagc atgatcgccc ggcttcgagg
      541 ggagcttaac cggcggcggt ggatcgccga cgaggtcacc ctgttcagcg cccgcgtgaa
      601 ggaggccatt cgccgccagg agagctacca tcttggcagg cgcacctcga gctcgaggcc
      661 gagagaagaa gtcgacgacg acgatcgcga ggactccgcc ggcaacgaac gccgccggtt
      721 tctgtcgctg acgttcggga tggacgacgc tgctgtgcac ggccagctcg ttggtaggga
      781 tatttcgatg caaaagctcg tccggtggct ggccgacggc gagccgaagc tcaaggtggc
      841 ttccattgtt ggatccggag gtgttggcaa gacgacgctg gccacagaat tctatcgtct
      901 gcatggccgg cggttggatg cgccgttcga ctgccgggct ttcgtgcgga cgccccggaa
      961 gcctgacatg acgaagatcc tcaccgacat gctgtcacag ctgcggccac aacatcagca
     1021 tcagtcttcg gatgtttggg aggttgatcg actccttgaa actatccgga cgcatttgca
     1081 agataaaagg tacttcatca taattgaaga tttatgggct tcatcaatgt gggatattgt
     1141 tagccgtggt ttgcctgata ataatagttg cagtagaata ctaataacaa cagaaattga
     1201 acctgtagct ttggcatgct gtggatataa ctcagagcac attattaaga ttgatccact
     1261 gggtgatgat gtctcaagtc aattgttttt cagtggagtt gttggccaag gaaatgaatt
     1321 tcctggacat cttactgaag tttctcatga catgataaaa aaatgtggtg gcttgccact
     1381 agcaataact ataacagcca gacattttaa aagccagctg ttagatggaa tgcagcaatg
     1441 gaatcacata caaaaatcat tgactacttc caatttgaag aaaaatccta ctttgcaggg
     1501 gatgaggcaa gtactcaacc ttatttacaa taatcttcct cattgtttga aagcatgtct
     1561 gttatacctt agcatctaca aagaggacta cataattagg aaggccaact tggtgaggca
     1621 atggatggct gaaggtttca tcaattccat agaaaataaa gtcatggaag aagttgcagg
     1681 gaactatttt gatgaacttg ttggtagggg cctggtccaa ccagtagatg ttaactgcaa
     1741 aaatgaggta ttgtcatgtg tagtgcacca catggtatta aatttcatca ggtgtaagtc
     1801 aatagaggag aatttcagca ttacattgga tcattctcag acgacagtaa gacatgctga
     1861 caaggttcgc cgactctcgc ttcacttcag caatgcacat gatacaacac cactagcagg
     1921 tttgagactc tcacaagttc gatcgatggc atttttcgga caagtcaagt gtatgccttc
     1981 cattgcagat tataggcttc ttcgagttct gattctttgt ttttgggctg atcaagagaa
     2041 aacaagctat gacctcacaa gcatttctga actgttacaa ctgagatatc tgaagataac
     2101 aggtaatatc acagttaaac ttccagagaa gatccaagga ctacaacact tgcagacact
     2161 ggaagcagat gcaagagcaa ctgctgtcct attggatatt gttcatacac agtgtttgtt
     2221 gcaccttcgt cttgtactac ttgatctgct ccctcactgt cacaggtaca tcttcaccag
     2281 catccccaaa tggactggaa agctcaacaa tctccgcatt ttaaacattg cagtcatgca
     2341 aatttcccag gatgaccttg acactctcaa aggactggga tctctcactg ctctttcgct
     2401 gcttgttcga acagcgcctg cgcaaagaat cgtcgctgcg aatgaggggt tcgggtctct
     2461 caagtacttc atgtttgtct gtacagcacc atgcatgact tttgtggaag gagcaatgcc
     2521 gagtgtgcaa agattaaatc taaggttcaa tgccaacgag ttcaagcagt atgactctaa
     2581 ggagacaggg ttggaacact tggtcgccct tgcagagatc tctgcaagaa ttgggggcac
     2641 tgatgatgat gaatcaaaca aaactgaagt ggagtctgcc ttgaggactg caattcgcaa
     2701 gcatccgacg ccgagcactc ttatggttga tatacaatgg gtggattgga tctttggtgc
     2761 tgaagggaga gacttggatg aagatttggc acaacaagat gatcacgggt tttgtatgct
     2821 accggaatcc tcttcacgtc ttcagagtag agagataagt atcgaagaag acatgcccac
     2881 cggtgcggaa gggacggtga ttgtgcccca cacaatggag cagttcgccc tccacatgag
     2941 ccaagccaag caatcccaca agctcgtagt catccagttc actacttccc ggtgccctgc
     3001 ttcacgctac atcgcgccag ctttcaccga gtatgcgaag gagttcgctg gtgcggtttt
     3061 cattaaggtc aatgtcgaca gcgatgagct ggagagtgtt acggactggt atgacatcga
     3121 agggatagtg ccaacatttt tcttcgtcaa ggatggggag aagattgaca agattcctgg
     3181 tgctaacaag gagttgctcc gagccaaaat tcgaaggcac acagcttctc cttacttcct
     3241 ccgttgataa tgacttcttt tatcgtcttt gtctagtata tatatggcac ttatatagtt
     3301 aactaggaag ggcaccttgt ttaatgtagc tttcattttt attatgaatg ttaaggatga
     3361 tattatattg ttgaagtatt tttttactcc ttgtaaacat gtattggtta ataacgaagt
     3421 agtttggaca ttagttatga ttttcttc
//