LOCUS AK070656 1513 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023055E24, full insert
sequence.
ACCESSION AK070656
VERSION AK070656.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1513)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1513
/clone="J023055E24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1513
/db_xref="Osa1:LOC_Os07g48980"
/db_xref="RAP-DB:Os07g0689600"
/note="(RAP Annotation release2) Nicotianamine synthase 3
(EC 2.5.1.43) (S-adenosyl-L-methionine:S-
adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-
carboxypropyltransferase 3) (OsNAS3)"
/note="(Rice Genome Annotation Project) nicotianamine
synthase 3, putative, expressed"
/note="mapping to R07-TIGRv4S1-001160F (Chr.7: short
arm=29321404, long arm=29322914, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 303 a 489 c 429 g 292 t
ORIGIN
1 gattccaatc caaaagtata atcaagcaaa gcagctcgat cgagtgttcg actgatcacc
61 agttggagct aatcgatcga gagagagagt atgacggtgg aagtggaggc ggtgacgatg
121 gcgaaggagg agcagccgga ggaggaggag gtgatcgaga agttggttga gaagatcacc
181 gggctggcgg cggccatcgg caagctgccg tcgctgagcc cgtcgccgga ggtgaacgcg
241 ctgttcacgg agctggtgat gacctgcatc ccgcccagca gcgtggacgt ggagcagctg
301 ggggcggagg cgcaggacat gcgcggccgc ctcatccgcc tctgcgccga cgccgagggc
361 cacctcgagg cgcactactc cgacgtcctc gccgcccacg acaacccgct cgaccacctc
421 gccctcttcc cctacttcaa caactacatc cagctcgccc agctcgagta cgccctcctc
481 gcccgccacc tccccgccgc cccgccgccc tcccgcctcg ccttcctcgg ctccggcccg
541 ctcccgctca gctccctcgt cctcgccgcc cgccacctcc ccgccgcctc cttccacaac
601 tacgacatct gcgccgacgc caaccgccgc gccagccgcc tcgtccgcgc cgaccgcgac
661 ctgtccgcgc gcatggcctt ccacacctcc gacgtcgccc acgtcaccac cgacctcgcc
721 gcctacgacg tcgtgttcct ggcggcgctg gtgggtatgg ccgccgagga gaaggcgcgc
781 atggtggagc acctcgggaa gcacatggcg cccggcgccg ccctggtggt gcggagcgcg
841 cacggcgccc ggggattcct gtaccccgtg gtggacccgg aggagatccg ccgcggcggc
901 ttcgacgtgc tcgccgtgca ccacccggag ggcgaggtga tcaactccgt catcatcgcg
961 cgcaagccgc ccgtggcggc gccggcgttg gggggaggag acgcgcacgc gcacggccat
1021 ggcgccgtgg tgagccgtcc atgccagcgc tgcgagatgg aggcgagggc gcaccagaag
1081 atggaggaca tgtccgccat ggagaagctg ccctcctcgt aggcaggcat cgatgactgc
1141 ttccatcgct tgctacctca ccagctcacc tgataaatca cctcagttac tatcgattaa
1201 tcatttacca tgcattaatt aagaagaaaa catatatacc ataattatct accagtaaaa
1261 caaatctaat agtagtattt aataatctcg ttggtaatta actgcagtca tgcatgaatg
1321 catgccatat tgcgtcgcta tctttttttc ccatgatgag actgatgaga gagagagaga
1381 atatatgtcg ctattgagtg ttactgcttg attactgtac tagtagctta ttacaatcaa
1441 ccattgtctc tgttgcgtat ttatgagtgt aagtggttaa ttttctgttg cagcataatt
1501 aagttacctg tat
//