LOCUS AK070645 1666 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023061L14, full insert
sequence.
ACCESSION AK070645
VERSION AK070645.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1666)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1666
/clone="J023061L14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 167..925
/db_xref="Osa1:LOC_Os02g35180"
/db_xref="RAP-DB:Os02g0557800"
/note="(RAP Annotation release2) CheY-like domain
containing protein"
/note="(Rice Genome Annotation Project) OsRR2 - Rice
type-A response regulator, expressed"
/note="mapping to R02-TIGRv4S1-000832R (Chr.2: short
arm=21122780, long arm=21125500, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92075.1"
/translation="MGAEAVRVLVVDDSPVDRRVVELLLRAHCGGGGGAAAGEAAPFH
VTAVDSGKKAMELLGRRRGDRDHLTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLL
KAIKALGSPNPIPVVVMSSENEPQRISRCLTAGAEDFILKPLKMNDVQRLRKCSGATR
PKSAVAGDDDRCCNTAKKAAAAAAATPEQQQQQQRSSHLAGLAMVMNASSFEVSHYFQ
LIFKLILLAYAVLCLSQLLHRWSNGSSLLSLWCA"
BASE COUNT 364 a 425 c 475 g 402 t
ORIGIN
1 gtttcttctt cttctctcgt cgtcgcgtcg cgcgcgggcg gcgaggcgag ggcgtcgcga
61 ttcctcctct ttcaaatact cccacggcga ggaccgcggc gagggcgcgc gggccattgc
121 tgctgcttct tctgctgctg cgtgtgtgtg ggtgagacct gagaggatgg gagcggaggc
181 ggtgagggtg ctggtggtgg acgactcgcc ggtggacagg cgggtcgtgg agctgcttct
241 ccgggcgcac tgcggcggcg gcggcggcgc cgccgccggc gaggcggctc cgttccacgt
301 caccgccgtg gacagcggca agaaggcgat ggagctgctc ggccggcggc ggggggaccg
361 ggaccacctc accccatcct ctccggcggc ggcggcggcg gccaacgatc aagcgatcga
421 catcgtgctg accgactact gcatgccgga gatgacagga tacgatcttc tcaaagccat
481 caaggcgttg gggtcgccga atccgatccc ggtggtggtc atgtcgtcgg agaatgagcc
541 ccagaggatc agcagatgct tgacagccgg tgccgaggat ttcatcctta agcctctcaa
601 gatgaacgat gtccagcgcc tccggaaatg ctccggcgcc accaggccga agtccgccgt
661 cgccggagac gatgaccggt gctgcaacac ggccaagaag gcggcggcgg cggccgcagc
721 cacaccggag cagcagcagc agcagcagag atcgtcgcac ctggcaggac tagccatggt
781 gatgaatgca tccagcttcg aggtgtcgca ctacttccag ctcatcttca agctcatcct
841 gctcgcctac gccgtgctgt gcctcagcca gctcctgcac agatggtcca atggcagcag
901 cctcctctcc ctgtggtgcg catgaattca agaaattaaa tcaaatcgac gatccagaag
961 gctggattga ttaatttccc attatcgatg aaaaaaattg aaaaaaaaag agagatggat
1021 gaagactcag tggcatagcg tggatttatc cgaaactgaa acctcttcat caagcaagag
1081 tgcagctaag gtggactaat tggatgcatg atgatctcca tcccagctaa gcatgggggt
1141 tcttaattaa ttcagctata atataatttt caacagccat gcatgcagca gcagctaaga
1201 tgtgatcttt ctaggggtag atttgttact tatttgttct taaattctca agaggattct
1261 aaccaggtta ttaattattt tcagagtttt ttaagtggta ctatactact actgctactt
1321 agattatttt gctgagagag aaaagagtag cagtacagta gcaccacaat ttgctcattt
1381 gtataaaggg gaacgcatga tttgagtggg catctggtgt cgtttttaat cctgatctcg
1441 atttgatacg ctgatgcaac tgtccggaga agcttctgct tctctctctc tcccaagatg
1501 tgtttttttt ttcttctttt ttttcgctct ctttctctct gggtgggtgg acgtagacgt
1561 ccacctgctc tgcacctcac gctgaatgag ttgaccggat ctcccgtatt atatatcgta
1621 atcttgttaa atgttaaggg agaaaggaga acagtgtatg gtgatc
//