LOCUS AK070618 2506 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023063A19, full insert
sequence.
ACCESSION AK070618
VERSION AK070618.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2506)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2506
/clone="J023063A19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 295..2334
/db_xref="Osa1:LOC_Os01g61390"
/db_xref="RAP-DB:Os01g0829900"
/note="(RAP Annotation release2) Oligopeptide transporter
OPT superfamily protein"
/note="(Rice Genome Annotation Project) transposon
protein, putative, unclassified, expressed"
/note="mapping to R01-TIGRv4S1-001580R (Chr.1: short
arm=35828844, long arm=35831900, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92058.1"
/translation="MESVGDPRDGPSTERAFEGQPVPPWTEQVTLRAVVASVALGVAL
SSVMMNLVFTSGIIPSLNISAGLLGFFLLKAWTRLLDQLGSPGRPFTRQENAVVQTCV
VACASMTYSGGFGSYLLAMDRKTAEKTSTGDDSSASVSEPEFGRMMAFFFLVSFVGLL
AIVPMRKTMIIRHRLTFPSGSATAHLINSFHTPHGARQAKRQVSLVLRSSLASLFWSI
FQWFYTGGPNCGFTSFPTFGLSAFNRGFYISLNGTYVGIGMISPHLINVSMLFGSIIS
WGIMRPYIRSKRGIWYDADLQETNLKSFSGYKVFCAIAMILGDGIFQLVAISLRTIHT
VRHHQVAAETLRSFSDVDAMPRPVMSFDDRRRTQVFLREHIPSTFAISGYVVLATVST
VVIPLMYGQVRYYHVAAAYAFAPVLAFCNAYGTGVAETNFSAQYNKLVILMFASWIGI
KNGGIVGSLVICGIVSSIVSTASDFMSDFKTSYLTLTSPRATLVSQVIGTAMGCVVNP
AVFTVFHHFYEMNPNKTYQAPLAKIYRGIAVLGAGGLELPKYCLAISATFFVLALAVC
AMREVAAHGKWRAEPYIPSVTGMAVSFLLVPAVSIDMCIGSLIVFLWNRNDKLGSQVF
GPVLASGLICGDGLFSIPYALLARYDVTPPICIRFLGRVQNDKLDAFLASKAKAG"
BASE COUNT 446 a 799 c 733 g 528 t
ORIGIN
1 ggcagtgaca cctccaaatc taacatttcg cggttgcatt accatctctt gcctcttggg
61 ctctgccaag aatagccaaa gcatatgtag ccttcctgcc tctcgtgttc actcgttcgg
121 tcctcttcct ccgttctcct cttccccttg ccctcctcca gatcgaccat cacttgcatg
181 catgcgcagg cacgatcgaa cgcagtagat gcattggctg ccagctcgat ccgcaccgac
241 gatactccgg cgaggcaaag cgcggcgtaa ggaggaggag gaaaagtggc cgggatggag
301 tcggtcggcg acccgcggga tgggccgtcg acggagcgcg cgttcgaggg gcagcccgtc
361 ccgccgtgga cggagcaggt gacgctgcgc gccgtggtgg cgagcgtggc gctgggcgtg
421 gccctgagca gcgtgatgat gaacctggtg ttcacgtcgg ggatcatccc gtcgctcaac
481 atctccgccg gcctcctcgg cttcttcctc ctcaaggcct ggacgcgcct gctcgaccag
541 ctcggctcgc cgggccgccc cttcacccgc caggagaacg ccgtcgtcca gacctgcgtc
601 gtcgcctgcg ccagcatgac atacagcggt gggtttggat cgtatctgct ggccatggat
661 cggaagacgg cggagaagac gagcaccggg gacgactcca gcgcgagcgt cagtgagccg
721 gagttcggtc ggatgatggc cttcttcttc ctcgttagct tcgtcggtct cctcgccatt
781 gtccccatga ggaagacaat gatcatccgc caccggctga cgttcccaag cggctcggcg
841 acggctcacc tcatcaacag cttccatacc cctcacggcg ctagacaagc gaagaggcaa
901 gtctcgctcg ttctccggtc gtcgttggcg agcttgttct ggtccatctt ccagtggttc
961 tacaccggag gtccaaactg cggcttcact tccttcccaa cgtttgggct cagcgccttc
1021 aatcgcggtt tctacatcag tttgaacgga acttatgtgg gaatcgggat gatcagtcct
1081 cacctgataa acgtctcgat gctcttcggg tccatcatct cctgggggat catgcggccg
1141 tacatccgga gcaaaagagg aatctggtac gacgccgatc tccaggagac gaacttgaag
1201 agcttcagtg gatacaaggt gttttgcgcc atagcaatga tcctcggcga cggcatcttc
1261 cagctcgtcg cgatctcgct gaggacgata cacacggtgc gccaccacca ggtagcggcg
1321 gagacgctca ggtccttctc cgacgtcgac gccatgccgc ggccggtgat gagcttcgac
1381 gaccgccgca ggacgcaggt gttcctcagg gagcacatcc cgagcacctt cgccatcagc
1441 gggtacgtcg tcctggccac cgtctccacc gtcgtcatcc cgctcatgta cggccaggtg
1501 aggtactacc acgtcgccgc cgcgtacgcg ttcgcgcccg tcctggcctt ctgcaacgcc
1561 tacggcacgg gcgtcgcgga gaccaacttc tcggcgcagt acaacaagct ggtgatcctc
1621 atgttcgcgt cgtggatcgg gatcaagaac ggcgggatcg tcgggagcct cgtcatctgc
1681 ggcatcgtgt cgtccatcgt ctccaccgcc tccgacttca tgtcggactt caagacgagc
1741 tacctgacgc tcacctcgcc gcgggccacg ctggtgagcc aggtgatcgg cacggcgatg
1801 gggtgcgtcg tcaacccggc cgtgttcacc gtcttccacc acttctacga gatgaacccc
1861 aacaagacgt accaggcgcc gctggccaag atctaccggg gcatcgccgt gctcggcgcc
1921 ggcggcctcg agctgcccaa gtactgcctc gccatcagcg ccaccttctt cgtgctggcg
1981 ctggccgtct gcgcgatgcg ggaggtggcc gcgcacggca agtggcgcgc cgagccgtac
2041 atcccgagcg tcaccggcat ggccgtgtcg ttcctgctgg tgccggcggt gtccatcgac
2101 atgtgcatcg gcagcctgat cgtgttcctg tggaaccgca acgacaagct gggatcgcag
2161 gtgttcgggc cggtgctggc gtccgggctc atctgcggcg acggcctctt ctccataccg
2221 tacgcgctgc tcgcgaggta cgacgtcacg ccgcccatct gcatcaggtt cctcggccgg
2281 gtgcagaacg acaagctgga cgctttcttg gcgagtaagg ctaaagctgg atgatcctga
2341 attcttgatc gaggaagaag tgggcacaat tgtttattcc gttctttttc ttccaacacc
2401 tgtagattat ttagtgatag aactgatctt ttcatgtaga gcgaaatgga ctttttgtgc
2461 ttttcaaaca gttgagattt caatccaacg aacatactat ggcagc
//