LOCUS AK069289 1472 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023012I24, full insert
sequence.
ACCESSION AK069289
VERSION AK069289.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1472)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1472
/clone="J023012I24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1472
/db_xref="Osa1:LOC_Os02g15594"
/db_xref="RAP-DB:Os02g0255100"
/note="(RAP Annotation release2) Protein phosphatase 2C
family protein"
/note="(Rice Genome Annotation Project) catalytic/
protein phosphatase type 2C/ protein serine/threonine
phosphatase, putative, expressed"
/note="mapping to R02-TIGRv4S1-000469F (Chr.2: short
arm=8760065, long arm=8766267, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 351 a 319 c 427 g 375 t
ORIGIN
1 tgggatctcg cctcgatcgc ggcggtggcg gtggggaggg gagcgcaccg cctgcccagc
61 catgagatgg tatgcttcgc tagcctgagg agggctctgc ctctgctgct gcgcgccacc
121 accaccacca ccccccgctt ccttctcccc agggccctct ccggcggcgt tggcggcggg
181 gcggcggtgg atgcgcgcgc gcttctccgt gggcacagcg ggtggcgcgg gctccgggtg
241 gccgccagga tgatgctcga ctcctccgac tccgccgccg ctgcggggca gatgcagccg
301 cagcagcgtg cggcgggggc cgtcgcctgc agcgcgcagg acggtggtgc cgcagggtac
361 gccagcggcg ggtgggcgag agaagatggt aaactgaaat gtggatattc aagttttaga
421 gggaagagag ccaccatgga ggatttctat gatgtaaagt taactgaaat cgatggacag
481 gctgttagcc tatttggtgt atttgatggt catggaggac cacgtgctgc tgagtatttg
541 aaggaaaatt tgttcgaaaa tcttctgaaa caccctgagt tcctgacaga tacaaagctt
601 gccataagtg aaacatatca gaaaacagat acagatttct tagaatcaga atccaatgcc
661 ttcagggatg atggttcaac agcttccact gcagttttgg tgggtggcca tctatatgta
721 gcaaatgttg gtgattcccg tgctgttgtt tcaaaagctg gtaaagctat ggcactgtca
781 gaagatcaca aacctaacag gagtgatgag cggaagagaa ttgaaaatgc aggaggagtt
841 gtcatttagg ctggtacttg gagggtagga ggtgtactgg caatgtcgcg tgcatttggc
901 aatcgtctac tgaagccatt tgtggtggca gagcctgaaa ttcaggaaga acttgtcaat
961 gaagacttgg aatgcctcgt tcttgctagc gatggacttt gggatgtcgt ggaaaatgag
1021 gaagctgttt cccttgcgaa aacagaagac ctgcctgagt cggtggctag gaaactcacg
1081 gaaatagcct attctcgagg cagcgctgac aacattacat gcatcgtggt gcaatttcac
1141 catgataaaa ctgaataata agatgggact agagctgatg aaaggttgaa ggtttttcta
1201 cttcaagcta ctttccagca gtccaaccac agagggggtt ccccaggaga tgttgctcct
1261 gtagcatttg ctaaggattg tttcgttgat tcttttcctt gtgtaggaat cattttttgt
1321 tttcagaggt gttacgaaca gaaaatttta tttcgagtgt aacacacagt tttaattgga
1381 tggatactaa taaatcaatt gcttgtttac ctaattacct gccattacgg gcatggcata
1441 taattctcga tgatatatag ttcttttttg gc
//