LOCUS AK069196 4282 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023003G18, full insert
sequence.
ACCESSION AK069196
VERSION AK069196.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4282)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4282
/clone="J023003G18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4282
/db_xref="Osa1:LOC_Os03g59340"
/db_xref="RAP-DB:Os03g0808100"
/note="(RAP Annotation release2) Similar to Cellulose
synthase-5"
/note="(Rice Genome Annotation Project) CESA2 - cellulose
synthase, expressed"
/note="mapping to R03-TIGRv4S1-001620R (Chr.3: short
arm=33718944, long arm=33725192, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1042 a 916 c 1070 g 1254 t
ORIGIN
1 ggctcgctgg tgccacgtcc ttttcttgtc ccgtttgatt cttgcaagcc tcctcatcca
61 gcttgtgctg ctagctacga ggtcggcttt ggcggtggcg gggggcgcct tgaatccgag
121 gcgatttggt gtctgactga ttgatttgcc tcacttgggg tgggggggag ttggggtttc
181 ttggtttcat cggggcggcc gcggaatgcg gtgaattggc gggagtccgt tcgtggagac
241 actttcttgg ccgtgagttc ttggttcgtg cgccatggac ggtgcgaaat cggggaagca
301 atgccatgtc tgccagatct gcggcgacgg cgtgggcacg gcggcggacg gcgagctctt
361 caccgcctgc gacgtctgcg ggttcccggt gtgccggcca tgctacgagt acgagcgcaa
421 ggacggcagc caggcgtgcc cgcagtgcaa gaccaagtac aagcgccaca aggggagccc
481 gccgatactt ggggatgaaa gcgatgatgt tgatgcggat gatgctagtg atgtgaacta
541 tccaacatcc ggcaaccagg accataagca caagattgcc gagaggatgc tcacctggcg
601 catgaactct gggaggaatg atgatattgt ccattctaag tatgatagtg gtgagattgg
661 tcatcccaag tatgacagtg gtgaaatccc tcgcatatat atcccatcgc tcactcacag
721 ccagatctca ggtgaaattc ctggagcgtc ccctgatcat atgatgtctc ccgttgggaa
781 cattggcaga cgtgggcatc catttcccta tgtgaaccat tcaccaaacc catcaaggga
841 gttttctggt agccttggca atgttgcatg gaaagagaga gtagatggct ggaaaatgaa
901 ggatgaaggt gcaattccca tggctaatgg tactagcatt gctccttcag aaggtcgtgg
961 ggttggtgac attgatgcat ctactgacta taacatggag gacgccttac tgaatgatga
1021 aacacgccaa cctctatcga gaaaagtgcc aatttcgtca tccagaataa atccgtacag
1081 gatggttatt gtgctccgat tgattgtcct atgtatattc ttgcactacc gtatcacaaa
1141 tcctgtgcgt aatgcatacc cgctatggtt gctctctgtc atatgtgaga tttggtttgc
1201 tctatcctgg attctggatc agttccccaa gtggtcccca atcaaccgtg aaacttacct
1261 ggataggctg gctttaaggt atgaccggga aggtgaacca tctcaattgg ctcctgttga
1321 catttttgtc agtactgtgg atcctatgaa agaacctcct cttgtcactg ccaatactgt
1381 gctctccatc cttgctgtgg attaccctgt tgataaggta tcttgctatg tgtctgatga
1441 tggagctgca atgttaacat ttgatgcgct tgctgagact tcagaatttg ctagaaaatg
1501 ggtaccgttc tgtaaaaagt acagcataga acccagagct ccagagtggt actttgcaca
1561 gaaaattgat tacttgaaag acaaagttca ggcttctttt gttaaagatc gtcgtgccat
1621 gaagagggaa tatgaagaat ttaaagttcg tgttaatgct ctcgtcgcca aggcacagaa
1681 agttcctgag gaaggatgga ttatgcaaga tggcacacct tggcctggta acaataccag
1741 agaccatcct ggaatgattc aggttttcct tggtcatagt ggaggccttg ataccgaagg
1801 caatgagctt cctcgtttag tctatgtgtc tcgtgagaaa cgtcctggat tccaacacca
1861 taaaaaggct ggtgctatga atgcacttgt tcgtgtatca gctgtcctta ctaatggaca
1921 atacttgttg aatcttgact gtgatcacta catcaacaat agcaaagctc tccgagaggc
1981 tatgtgcttc cttatggatc caaacctagg aaggcgtgtc tgttatgtcc aattccctca
2041 gaggtttgac ggtatcgata gaaatgatcg atatgcaaac aggaacaccg tgtttttcga
2101 tattaatttg agaggtctcg atggtctcca aggaccagtt tatgtgggaa ccggttgtgt
2161 gttcaacaga acagctcttt atggttatga accccccatt aagcagaaga ggccaggtta
2221 cttctcttcg ctttgtgggg gacgaaagaa gacaaaaaag tcgaaggaga agagcacgga
2281 aaagaaaaag tcacacaaac atgtggacag ttctgtgcca gtttttaatc ttgaagatat
2341 agaggaaggg attgaaggtt ctggatttga tgatgagaaa tcactactga tgtctcaaat
2401 gagcttagag aaaagatttg gtcaatctag tgtttttgta gcctccactc tgatggaata
2461 tggtggtgtt cctcaatccg caactccaga atctcttctg aaagaggcca tacatgttat
2521 cagctgtggc tatgaagaca aaagtgactg gggaactgag attggatgga tctatggttc
2581 tgttacagaa gatattctca ctggattcaa gatgcatgca cgtggctggc ggtcaatcta
2641 ctgcatgcct aagcgaccag cattcaaggg gtctgcccca attaatcttt cggatcgtct
2701 gaaccaggtg cttcggtggg ctcttggttc tgtggaaatt ctttttagca ggcattgtcc
2761 catatggtat gggtacggag gacggcttaa gttcctggag agatttgctt acatcaacac
2821 cactatttat ccactcacat cgattccact cctcttgtac tgcatattgc cagctatctg
2881 tcttctcact gggaagttca tcataccaga gattagcaac tttgcgagta tttggtttat
2941 ctctctcttt ctgtcaatct ttgctactgg tatccttgag atgaggtgga gtggtgttgg
3001 catcgatgaa tggtggagga atgagcagtt ttgggttatt ggaggtattt ccgctcatct
3061 atttgcggtc ttccagggtc tgctgaaggt gcttgctgga attgatacca gcttcactgt
3121 cacctcaaag gcctctgatg aagaaggcga tttcgctgag ctctacatgt tcaagtggac
3181 aacccttctg atcccaccga ccactatttt gatcatcaac ctggtcggtg ttgttgctgg
3241 tatctcctac gctatcaaca gtggctacca gtcatggggt ccgctctttg ggaagctctt
3301 ctttgccttc tgggtgattg tccacctgta ccccttcctt aagggtctca tgggtcggca
3361 gaaccgtaca ccgaccattg ttgttgtttg ggccatcctc cttgcatcga tcttctcctt
3421 gctgtgggtt cgtatcgatc cattcaccac ccgtgtcaca ggccctgata cccaaaaatg
3481 tggtatcaac tgctaggagt gagcaagata gtaggcaaag aatcgccagt ttgctatcca
3541 ttctgttgtg taagttatta gtggatgact ctatatagtc tactgtaaga tcttagctgc
3601 cggaatgctt gttatgtatt aaggagtagt aagtggtacc ttgctgttca tctgttgata
3661 attaagttag tagaactact ttgctgaaaa atgcctgaca acattctgct gcacttaatg
3721 ggaatatgaa atcaatgttg ctctgtatga aagaatttac atgtatataa cttgaatcaa
3781 tttaacaaat acactctgta gccttgtagg cacactgcat tgcaggttcc tggtagaaac
3841 cccaatgagt gtatgcacaa tgtatgcata aatatgactg attccttctg aattttttta
3901 tacacacttt atacagtaat gaactttatc aggcccagtt cctcctaatt tgtgctggtg
3961 catggttgtg gaacaactgt tccagatttc ctccattttg cattctggca agtacttcct
4021 gtggcaccat tgtcatccac catttccagg ttgatgtcct gtaaggaaat gtcatagcat
4081 gggtagttct tgctgcagtt cagagtgatg gcactcttgg aaattgttgt ccctgcgatg
4141 ttcttgaaga ccacattgct aatctccact gctgatccct gagatccatg ttcatggcaa
4201 atttgcaata attgtgtgat ttggatgatt tttgttgagc attactcact ggtgttaaat
4261 aaaggattgg tttttgagag ct
//