LOCUS AK067534 2654 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013112P19, full insert
sequence.
ACCESSION AK067534
VERSION AK067534.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2654)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2654
/clone="J013112P19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2654
/db_xref="Osa1:LOC_Os12g18360"
/note="(Rice Genome Annotation Project) RGH2A, putative,
expressed"
/note="mapping to R12-TIGRv4S1-000392R (Chr.12: short
arm=10603788, long arm=10608550, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 741 a 554 c 624 g 735 t
ORIGIN
1 gatatttcga tgcaaaagct cgtccggtgg ctggccgacg gcgagccgaa gctcaaggtg
61 gcttccattg ttggatccgg aggtgttggc aagacgacgc tggccacaga attctatcgt
121 ctgcatggcc ggcggttgga tgcgccgttc gactgccggg ctttcgtgcg gacgccccgg
181 aagcctgaca tgacgaagat cctcaccgac atgctgtcac agctgcggcc acaacatcag
241 catcagtctt cggatgtttg ggaggttgat cgactccttg aaactatccg gacgcatttg
301 caagataaaa ggtacttcat cataattgaa gatttatggg cttcatcaat gtgggatatt
361 gttagccgtg gtttgcctga taataatagt tgcagtagaa tactaataac aacagaaatt
421 gaacctgtag ctttggcatg ctgtggatat aactcagagc acattattaa gattgatcca
481 ctgggtgatg atgtctcaag tcaattgttt ttcagtggag ttgttggcca aggaaatgaa
541 tttcctggac atcttactga agtttctcat gacatgataa aaaaatgtgg tggcttgcca
601 ctagcaataa ctataacagc cagacatttt aaaagccagc tgttagatgg aatgcagcaa
661 tggaatcaca tacaaaaatc attgactact tccaatttga agaaaaatcc tactttgcag
721 gggatgaggc aagtactcaa ccttatttac aataatcttc ctcattgttt gaaagcatgt
781 ctgttatacc ttagcatcta caaagaggac tacataatta ggaaggccaa cttggtgagg
841 caatggatgg ctgaaggttt catcaattcc atagaaaata aagtcatgga agaagttgca
901 gggaactatt ttgatgaact tgttggtagg ggcctggtcc aaccagtaga tgttaactgc
961 aaaaatgagg tattgtcatg tgtagtgcac cacatggtat taaatttcat caggtgtaag
1021 tcaatagagg agaatttcag cattacattg gatcattctc agacgacagt aagacatgct
1081 gacaaggttc gccgactctc gcttcacttc agcaatgcac atgatacaac accactagca
1141 ggtttgagac tctcacaagt tcgatcgatg gcatttttcg gacaagtcaa gtgtatgcct
1201 tccattgcag attataggct tcttcgagtt ctgattcttt gtttttgggc tgatcaagag
1261 aaaacaagct atgacctcac aagcatttct gaactgttac aactgagata tctgaagata
1321 acaggtaata tcacagttaa acttccagag aagatccaag gactacaaca cttgcagaca
1381 ctggaagcag atgcaagagc aactgctgtc ctattggata ttgttcatac acagtgtttg
1441 ttgcaccttc gtcttgtact acttgatctg ctccctcact gtcacaggta catcttcacc
1501 agcatcccca aatggactgg aaagctcaac aatctccgca ttttaaacat tgcagtcatg
1561 caaatttccc aggatgacct tgacactctc aaaggactgg gatctctcac tgctctttcg
1621 ctgcttgttc gaacagcgcc tgcgcaaaga atcgtcgctg cgaatgaggg gttcgggtct
1681 ctcaagtact tcatgtttgt ctgtacagca ccatgcatga cttttgtgga aggagcaatg
1741 ccgagtgtgc aaagattaaa tctaaggttc aatgccaacg agttcaagca gtatgactct
1801 aaggagacag ggttggaaca cttggtcgcc cttgcagaga tctctgcaag aattgggggc
1861 actgatgatg atgaatcaaa caaaactgaa gtggagtctg ccttgaggac tgcaattcgc
1921 aagcatccga cgccgagcac tcttatggtt gatatacaat gggtggattg gatctttggt
1981 gctgaaggga gagacttgga tgaagatttg gcacaacaag atgatcacgg gttttgtatg
2041 ctaccggaat cctcttcacg tcttcagagt agagagataa gtatcgaaga agacatgccc
2101 accggtgcgg aagggacggt gattgtgccc cacacaatgg agcagttcgc cctccacatg
2161 agccaagcca agcaatccca caagctcgta gtcatccagt tcactacttc ccggtgccct
2221 gcttcacgct acatcgcgcc agctttcacc gagtatgcga aggagttcgc tggtgcggtt
2281 ttcattaagg tcaatgtcga cagcgatgag ctggagagtg ttacggactg gtatgacatc
2341 gaagggatag tgccaacatt tttcttcgtc aaggatgggg agaagattga caagattcct
2401 ggtgctaaca aggagttgct ccgagccaaa attcgaaggc acacagcttc tccttacttc
2461 ctccgttgat aatgacttct tttatcgtct ttgtctagta tatatatggc acttatatag
2521 ttaactagga agggcacctt gtttaatgta gctttcattt ttattatgaa tgttaaggat
2581 gatattatat tgttgaagta tttttttact ccttgtaaac atgtattggt taataacgaa
2641 gtagtttgga catc
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