LOCUS AK067023 1834 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013092M02, full insert
sequence.
ACCESSION AK067023
VERSION AK067023.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1834)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1834
/clone="J013092M02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1834
/db_xref="Osa1:LOC_Os09g20990"
/db_xref="RAP-DB:Os09g0376800"
/note="(RAP Annotation release2) Similar to
Trehalose-6-phosphate synthase (Fragment)"
/note="(Rice Genome Annotation Project) trehalose
6-phosphate synthase, putative, expressed"
/note="mapping to R09-TIGRv4S1-000306R (Chr.9: short
arm=12645002, long arm=12649073, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 489 a 374 c 416 g 555 t
ORIGIN
1 gtcgagtctt acaaacattt cttctcctct ctctctctct ctctctctca actccaccac
61 atttgtctgt gttcttgctg tctcttcttc tcctacttcc tctactcgat tcgaggtttg
121 gctgctgctg ctgttgctgc tgatagtggt ggtggtgggt gggagcagaa gcagaagcag
181 gaggcaaaga aaatctcgag gaaggaagca gaagaagcag ccaagaaacg ccgccatctc
241 atctggatgc gctgaatcta tctgccgcgg tggaggttgt ggaatcatgg tttcaaagtc
301 atatacaaat cttctagata tgagtggtga agatgtgttt gactttcagc aaccatttag
361 atcgcttcct cgttttgtga cttccccaag catcacatct aatcctgatt gggatacaag
421 taatgctgat gattcagttg gtcctgcatc ttgctgtgta aggaaaataa tcgtctccaa
481 ctttcttcca ctaaactgta ccaaagatga agctactgga cagtggtcct tctcaatgga
541 tgacaatcaa cttcttgttc aacttaaaga tggatttcca atggagagcg aagttgttta
601 tgtgggtagc ttgaacgctg aagttgatcc tggtgagcaa gatcaacttt cacagaaact
661 tttcagagaa tacaaatgca tacctacttt cctcccagct gacctccagc agcagttcta
721 tcatggattc tgtaaacaac aattatggcc acttttccat tatatgcttc ctatttgcct
781 cgacaaaggc gagctctttg accgctctct atttcaagcc tatgttcggg caaacaaaat
841 atttggtgac aaagttatgg aggccatcaa ttcagatgat gactgtgtgt gggttcatga
901 ttatcacctc atgcttctcc caaccttttt aagaaaaaag cttcatcgca tcaaaattgg
961 tttcttcctt cacagtccat ttccctcctc tgaaatctat aggacactgc cagtaagaga
1021 tgaaattttg aagtctcttc tgaatgctga tctcattggc tttcaaacat ttgactatgc
1081 ccgccacttc ctttcatgtt gcagcagatt gttaggcctt aattacgagt caaaacgtgg
1141 tcacatcggt atagagtact ttggccgtac ggtgagcctc aagatccttg ctgtgggtgt
1201 acatgttggt cgtcttgagt ctgtgttgag gctgcctgcc acaattagca aggttcaaga
1261 aattgagcaa agatataagg gtaagatggt gatgttgggt gtagatgata tggatatctt
1321 caaagggatc agtctaaaat tgcttggctt ggaatttctt ttggagagaa ctccaaagct
1381 aagagggaag gttgtccttg tgcagattat aaatcctgca agaagcactg gaaaagatgt
1441 ggaggaagca ataaatgaag ccgtctctgt agctgaaagg ataaacatta agtatggttc
1501 tgctgagtac aagcctgtca tccttatcga ctaccccata ccttcttatg agaagattgc
1561 atactatgct gcatctgatt gctgtattgt aaatgctgtg agggatggga tgaacttgat
1621 accatatgag tatactgtct gcaggcaggg aaatgaggag attgataagc tcagaggtgt
1681 tgataagagc tcacatcaca caagcacact aattgtgtct gagtttgttg gttgctcccc
1741 atcacttagt ggtgctttca gggtaaatcc ttggagtatt gaagatgtag ctgatgcatt
1801 atataaagca atggatttga ctcaatcgga gagg
//