LOCUS AK066558 4038 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013072N20, full insert sequence. ACCESSION AK066558 VERSION AK066558.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 4038) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..4038 /clone="J013072N20" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..4038 /db_xref="Osa1:LOC_Os12g18360" /note="(Rice Genome Annotation Project) RGH2A, putative, expressed" /note="mapping to R12-TIGRv4S1-000392R (Chr.12: short arm=10603829, long arm=10609330, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 1066 a 917 c 972 g 1083 t ORIGIN 1 gactagatag gattaagttt caagagttaa tttcttgtac tcttgggcga tccatgctgt 61 caaatcagca actaacgagg cataatctcg atcactagct ctgatctgat cttcagctag 121 cgccggcgag ctgcagaggt ctccatccat ggcgccggcg gtcagtgcat cgcagggtgt 181 catcatgcgg tccctgacga gcaagctcga ctcgctgctg ctgcagccgc cggagccgcc 241 gccgcctgcg caaccgtcgt cgctgcggaa gggggagagg aagaagatcc tcctcctcag 301 aggcgatctc cgacacctgc tagatgacta ctacctcctc gtggagccgc cgtcagacac 361 cgcgccaccg ccagactcga cggcggcgtg ctgggctaag gaggttcgcg agctctccta 421 cgacgtcgac gacttcctcg acgagctaac gacccagctc ctccaccacc gcggcggcgg 481 cgatggcagt agcactgctg gtgccaagaa gatgatcagc agcatgatcg cccggcttcg 541 aggggagctt aaccggcggc ggtggatcgc cgacgaggtc accctgttca gcgcccgcgt 601 gaaggaggcc attcgccgcc aggagagcta ccatcttggc aggcgcacct cgagctcgag 661 gccgagagaa gaagtcgacg acgacgatcg cgaggactcc gccggcaacg aacgccgccg 721 gtttctgtcg ctgacgttcg ggatggacga cgctgctgtg cacggccagc tcgttggtag 781 ggatatttcg atgcaaaagc tcgtccggtg gctggccgac ggcgagccga agctcaaggt 841 ggcttccatt gttggatccg gaggtgttgg caagacgacg ctggccacag aattctatcg 901 tctgcatggc cggcggttgg atgcgccgtt cgactgccgg gctttcgtgc ggacgccccg 961 gaagcctgac atgacgaaga tcctcaccga catgctgtca cagctgcggc cacaacatca 1021 gcatcagtct tcggatgttt gggaggttga tcgactcctt gaaactatcc ggacgcattt 1081 gcaagataaa aggtacttca tcataattga agatttatgg gcttcatcaa tgtgggatat 1141 tgttagccgt ggtttgcctg ataataatag ttgcagtaga atactaataa caacagaaat 1201 tgaacctgta gctttggcat gctgtggata taactcagag cacattatta agattgatcc 1261 actgggtgat gatgtctcaa gtcaattgtt tttcagtgga gttgttggcc aaggaaatga 1321 atttcctgga catcttactg aagtttctca tgacatgata aaaaaatgtg gtggcttgcc 1381 actagcaata actataacag ccagacattt taaaagccag ctgttagatg gaatgcagca 1441 atggaatcac atacaaaaat cattgactac ttccaatttg aagaaaaatc ctactttgca 1501 ggggatgagg caagtactca accttattta caataatctt cctcattgtt tgaaagcatg 1561 tctgttatac cttagcatct acaaagagga ctacataatt aggaaggcca acttggtgag 1621 gcaatggatg gctgaaggtt tcatcaattc catagaaaat aaagtcatgg aagaagttgc 1681 agggaactat tttgatgaac ttgttggtag gggcctggtc caaccagtag atgttaactg 1741 caaaaatgag gtattgtcat gtgtagtgca ccacatggta ttaaatttca tcaggtgtaa 1801 gtcaatagag gagaatttca gcattacatt ggatcattct cagacgacag taagacatgc 1861 tgacaaggtt cgccgactct cgcttcactt cagcaatgca catgatacaa caccactagc 1921 aggtttgaga ctctcacaag ttcgatcgat ggcatttttc ggacaagtca agtgtatgcc 1981 ttccattgca gattataggc ttcttcgagt tctgattctt tgtttttggg ctgatcaaga 2041 gaaaacaagc tatgacctca caagcatttc tgaactgtta caactgagat atctgaagat 2101 aacaggtaat atcacagtta aacttccaga gaagatccaa ggactacaac acttgcagac 2161 actggaagca gatgcaagag caactgctgt cctattggat attgttcata cacagtgttt 2221 gttgcacctt cgtcttgtac tacttgatct gctccctcac tgtcacaggt acatcttcac 2281 cagcatcccc aaatggactg gaaagctcaa caatctccgc attttaaaca ttgcagtcat 2341 gcaaatttcc caggatgacc ttgacactct caaaggactg ggatctctca ctgctctttc 2401 gctgcttgtt cgaacagcgc ctgcgcaaag aatcgtcgct gcgaatgagg ggttcgggtc 2461 tctcaagtac ttcatgtttg tctgtacagc accatgcatg acttttgtgg aaggagcaat 2521 gccgagtgtg caaagattaa atctaaggtt caatgccaac gagttcaagc agtctgactc 2581 taaggagaca gggttggaac acttggtcgc ccttgcagag atctctgcaa gaattggggg 2641 cactgatgat gatgaatcaa acaaaactga agtggagtct gccttgagga ctgcaattcg 2701 caagcatccg acgccgagca ctcttatggt tgatatacaa tgggtggatt ggatctttgg 2761 tgctgaaggg agagacttgg atgaagattt ggcacaacaa gatgatcacg ggtatggatt 2821 tttcattcta ttcccaggtt acaacttaca aggattattg agcttctttc tttctctgcc 2881 gtggcttcta tctttacctt ctatgcatct tcaacctgac ttgatgattg tttgaaacca 2941 attttaatgg aagttaaatg ttattgttgt gaccctgaat caggttttgt atgctaccgg 3001 aatcctcttc acgtcttcag agtagaggta attttgtttc ttgtcatttt acagttacag 3061 ttcatctact taaggaatta atgggaggtc ctatattttc tcgggtacct agaaggtgtg 3121 gttcctagtc ttacctcctt aagaaccgta gaatgttggc cctaacactt ggatcaaaga 3181 acgaaaggtg tatgcactat agtatccttt atatattgca caagtcaaga catttgttaa 3241 aacacaccca gtgctagtaa tttgtttact gagatatgaa ttatcgccaa atacccatac 3301 tgagcctatt agtaaaatat ttacgaggtg tttgaggaca gcataacttt cagtaaagaa 3361 tttactacgt gaggtgtgtg ttttaggtat tgcgcatctt gggtgcattt tagcgcaaac 3421 gtgtataata tatatcccat ggtactaact catgtcttaa ccataattgc acaccaacac 3481 aaaacataca ctactacaga gataagtatc gaagaagaca tgcccaccgg tgcggaaggg 3541 acggtgattg tgccccacac aatggagcag ttcgccctcc acatgagcca agccaagcaa 3601 tcccacaagc tcgtagtcat ccagttcact acttcccggt gccctgcttc acgctacatc 3661 gcgccagctt tcaccgagta tgcgaaggag ttcgctggtg cggttttcat taaggtcaat 3721 gtcgacagcg atgagctgga gagtgttacg gactggtatg acatcgaagg gatagtgcca 3781 acatttttct tcgtcaagga tggggagaag attgacaaga ttcctggtgc taacaaggag 3841 ttgctccgag ccaaaattcg aaggcacaca gcttctcctt acttcctccg ttgataatga 3901 cttcttttat cgtctttgtc tagtatatat atggcactta tatagttaac taggaagggc 3961 accttgttta atgtagcttt catttttatt atgaatgtta aggatgatat tatattgttg 4021 aagtattttt ttactccc //