LOCUS       AK066558                4038 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013072N20, full insert
            sequence.
ACCESSION   AK066558
VERSION     AK066558.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 4038)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..4038
                     /clone="J013072N20"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..4038
                     /db_xref="Osa1:LOC_Os12g18360"
                     /note="(Rice Genome Annotation Project) RGH2A, putative,
                     expressed"
                     /note="mapping to R12-TIGRv4S1-000392R (Chr.12: short
                     arm=10603829, long arm=10609330, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT         1066 a          917 c          972 g         1083 t
ORIGIN      
        1 gactagatag gattaagttt caagagttaa tttcttgtac tcttgggcga tccatgctgt
       61 caaatcagca actaacgagg cataatctcg atcactagct ctgatctgat cttcagctag
      121 cgccggcgag ctgcagaggt ctccatccat ggcgccggcg gtcagtgcat cgcagggtgt
      181 catcatgcgg tccctgacga gcaagctcga ctcgctgctg ctgcagccgc cggagccgcc
      241 gccgcctgcg caaccgtcgt cgctgcggaa gggggagagg aagaagatcc tcctcctcag
      301 aggcgatctc cgacacctgc tagatgacta ctacctcctc gtggagccgc cgtcagacac
      361 cgcgccaccg ccagactcga cggcggcgtg ctgggctaag gaggttcgcg agctctccta
      421 cgacgtcgac gacttcctcg acgagctaac gacccagctc ctccaccacc gcggcggcgg
      481 cgatggcagt agcactgctg gtgccaagaa gatgatcagc agcatgatcg cccggcttcg
      541 aggggagctt aaccggcggc ggtggatcgc cgacgaggtc accctgttca gcgcccgcgt
      601 gaaggaggcc attcgccgcc aggagagcta ccatcttggc aggcgcacct cgagctcgag
      661 gccgagagaa gaagtcgacg acgacgatcg cgaggactcc gccggcaacg aacgccgccg
      721 gtttctgtcg ctgacgttcg ggatggacga cgctgctgtg cacggccagc tcgttggtag
      781 ggatatttcg atgcaaaagc tcgtccggtg gctggccgac ggcgagccga agctcaaggt
      841 ggcttccatt gttggatccg gaggtgttgg caagacgacg ctggccacag aattctatcg
      901 tctgcatggc cggcggttgg atgcgccgtt cgactgccgg gctttcgtgc ggacgccccg
      961 gaagcctgac atgacgaaga tcctcaccga catgctgtca cagctgcggc cacaacatca
     1021 gcatcagtct tcggatgttt gggaggttga tcgactcctt gaaactatcc ggacgcattt
     1081 gcaagataaa aggtacttca tcataattga agatttatgg gcttcatcaa tgtgggatat
     1141 tgttagccgt ggtttgcctg ataataatag ttgcagtaga atactaataa caacagaaat
     1201 tgaacctgta gctttggcat gctgtggata taactcagag cacattatta agattgatcc
     1261 actgggtgat gatgtctcaa gtcaattgtt tttcagtgga gttgttggcc aaggaaatga
     1321 atttcctgga catcttactg aagtttctca tgacatgata aaaaaatgtg gtggcttgcc
     1381 actagcaata actataacag ccagacattt taaaagccag ctgttagatg gaatgcagca
     1441 atggaatcac atacaaaaat cattgactac ttccaatttg aagaaaaatc ctactttgca
     1501 ggggatgagg caagtactca accttattta caataatctt cctcattgtt tgaaagcatg
     1561 tctgttatac cttagcatct acaaagagga ctacataatt aggaaggcca acttggtgag
     1621 gcaatggatg gctgaaggtt tcatcaattc catagaaaat aaagtcatgg aagaagttgc
     1681 agggaactat tttgatgaac ttgttggtag gggcctggtc caaccagtag atgttaactg
     1741 caaaaatgag gtattgtcat gtgtagtgca ccacatggta ttaaatttca tcaggtgtaa
     1801 gtcaatagag gagaatttca gcattacatt ggatcattct cagacgacag taagacatgc
     1861 tgacaaggtt cgccgactct cgcttcactt cagcaatgca catgatacaa caccactagc
     1921 aggtttgaga ctctcacaag ttcgatcgat ggcatttttc ggacaagtca agtgtatgcc
     1981 ttccattgca gattataggc ttcttcgagt tctgattctt tgtttttggg ctgatcaaga
     2041 gaaaacaagc tatgacctca caagcatttc tgaactgtta caactgagat atctgaagat
     2101 aacaggtaat atcacagtta aacttccaga gaagatccaa ggactacaac acttgcagac
     2161 actggaagca gatgcaagag caactgctgt cctattggat attgttcata cacagtgttt
     2221 gttgcacctt cgtcttgtac tacttgatct gctccctcac tgtcacaggt acatcttcac
     2281 cagcatcccc aaatggactg gaaagctcaa caatctccgc attttaaaca ttgcagtcat
     2341 gcaaatttcc caggatgacc ttgacactct caaaggactg ggatctctca ctgctctttc
     2401 gctgcttgtt cgaacagcgc ctgcgcaaag aatcgtcgct gcgaatgagg ggttcgggtc
     2461 tctcaagtac ttcatgtttg tctgtacagc accatgcatg acttttgtgg aaggagcaat
     2521 gccgagtgtg caaagattaa atctaaggtt caatgccaac gagttcaagc agtctgactc
     2581 taaggagaca gggttggaac acttggtcgc ccttgcagag atctctgcaa gaattggggg
     2641 cactgatgat gatgaatcaa acaaaactga agtggagtct gccttgagga ctgcaattcg
     2701 caagcatccg acgccgagca ctcttatggt tgatatacaa tgggtggatt ggatctttgg
     2761 tgctgaaggg agagacttgg atgaagattt ggcacaacaa gatgatcacg ggtatggatt
     2821 tttcattcta ttcccaggtt acaacttaca aggattattg agcttctttc tttctctgcc
     2881 gtggcttcta tctttacctt ctatgcatct tcaacctgac ttgatgattg tttgaaacca
     2941 attttaatgg aagttaaatg ttattgttgt gaccctgaat caggttttgt atgctaccgg
     3001 aatcctcttc acgtcttcag agtagaggta attttgtttc ttgtcatttt acagttacag
     3061 ttcatctact taaggaatta atgggaggtc ctatattttc tcgggtacct agaaggtgtg
     3121 gttcctagtc ttacctcctt aagaaccgta gaatgttggc cctaacactt ggatcaaaga
     3181 acgaaaggtg tatgcactat agtatccttt atatattgca caagtcaaga catttgttaa
     3241 aacacaccca gtgctagtaa tttgtttact gagatatgaa ttatcgccaa atacccatac
     3301 tgagcctatt agtaaaatat ttacgaggtg tttgaggaca gcataacttt cagtaaagaa
     3361 tttactacgt gaggtgtgtg ttttaggtat tgcgcatctt gggtgcattt tagcgcaaac
     3421 gtgtataata tatatcccat ggtactaact catgtcttaa ccataattgc acaccaacac
     3481 aaaacataca ctactacaga gataagtatc gaagaagaca tgcccaccgg tgcggaaggg
     3541 acggtgattg tgccccacac aatggagcag ttcgccctcc acatgagcca agccaagcaa
     3601 tcccacaagc tcgtagtcat ccagttcact acttcccggt gccctgcttc acgctacatc
     3661 gcgccagctt tcaccgagta tgcgaaggag ttcgctggtg cggttttcat taaggtcaat
     3721 gtcgacagcg atgagctgga gagtgttacg gactggtatg acatcgaagg gatagtgcca
     3781 acatttttct tcgtcaagga tggggagaag attgacaaga ttcctggtgc taacaaggag
     3841 ttgctccgag ccaaaattcg aaggcacaca gcttctcctt acttcctccg ttgataatga
     3901 cttcttttat cgtctttgtc tagtatatat atggcactta tatagttaac taggaagggc
     3961 accttgttta atgtagcttt catttttatt atgaatgtta aggatgatat tatattgttg
     4021 aagtattttt ttactccc
//