LOCUS AK066443 1614 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013067J16, full insert
sequence.
ACCESSION AK066443
VERSION AK066443.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1614)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1614
/clone="J013067J16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1614
/db_xref="Osa1:LOC_Os01g16260"
/db_xref="RAP-DB:Os01g0268100"
/note="(RAP Annotation release2) Similar to Major
facilitator superfamily antiporter"
/note="(Rice Genome Annotation Project) carbohydrate
transporter/ sugar porter/ transporter, putative,
expressed"
/note="mapping to R01-TIGRv4S1-000515R (Chr.1: short
arm=9201178, long arm=9208445, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 366 a 365 c 395 g 488 t
ORIGIN
1 ggatccaggg ggggggggtg gtgaagagct agagctggcg gcgggttgtt gaggagcggc
61 tgactgaggg gagaccagac caatggttgg cggcggggcg ggcgagccgc tgaggagggc
121 gtgggggtac caccccgagt gccccggatg cagggtggac aggaggaagg aggagaggga
181 ggggatcccc tacacggagc tctccctcat ctggctcgtc accgtctcct ccaccctgcc
241 gatacaatcc ctgtttccct tcttgtattt tatgataagg gacctgcata ttgctaaaca
301 agaagaagat attggatttt atgctggttt tgtcggcgct tcatatatgt ttggaagagc
361 actctcctct gtgatatggg gcatcgtggc tgataagtac gggaggaagc cgattattat
421 aattaccctt atttcaataa ttattttcaa tacactcttt ggactcagct caagttattg
481 gatggcatta acctcaagag gtttgcttgg tctgatgtgt ggtatacttg gcccaattaa
541 ggcctatgct acagaagtgt gccgaaaaga acacggtcac cttggactat cccttgtttc
601 ttcctcacgt ggcataggcc ttattgtggg accagctatt ggtggttatc ttgcacagcc
661 tgcagataaa tatccaagca tattctctga gaagtctata tttgggaggt ttccgtattt
721 tctcccctgc ttatgtatat ccctccttgc cattgttgct ctacttgctt ccttctggct
781 cccggaaact ttgcataagc acactcagga tatggtttta gaggattcaa tttctgtaga
841 agaaggtctt tctggtccaa ctgctgaaga aaatagtgct ggatgtctaa atttattcac
901 aaactggcca ctgatgtctg ctatcattgc atactgcata ttctctcttc aggatgtggc
961 ttatgctgag gtattttctc tatgggctgt cagcgacagg aagtatggtg gatcaagctt
1021 ttcttcccaa gatgtgggta gtgtccttgc attctcaggt ctcttcctcc tggtattcca
1081 aattttggtt tacccgtcag tggcaaaatc agtagagccc atcacgcttg tccgtatagt
1141 ggcaatattg actataccac ttctttctag ctatccattt atggccggat tgtcagggtc
1201 cattcttcaa ttgatagtta actgtgcatc ttttctgaag aatgcttttg cagttactac
1261 catcactgta ttcaacatct taatgaatga tgctgtggct caggacgtta gagcttcagc
1321 caacggtgtt gctgtaactc tgatgtccat ctttaaagct attgctccag caattgcagg
1381 agctatattt gcatgggctc aaaggcgtca gacagcttca tttctcccag gcgaccacct
1441 ggtattcttc atgctgaacg tcttcacagt catcggtctt gtgagcactt tcaggccgtt
1501 ttacgctaga agaagcacga agcacgatcc cattactact tagcactaac cattctactc
1561 aggacctgag gtctgatgta gacccccatt tttataacag gaatcactcg tgtt
//