LOCUS AK064566 2339 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-112-D04, full insert sequence. ACCESSION AK064566 VERSION AK064566.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2339) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2339 /clone="002-112-D04" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2339 /db_xref="Osa1:LOC_Os07g10390" /db_xref="RAP-DB:Os07g0203700" /note="(RAP Annotation release2) Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein" /note="(Rice Genome Annotation Project) nucleic acid binding protein, putative, expressed" /note="mapping to R07-TIGRv4S1-000220R (Chr.7: short arm=5566013, long arm=5573994, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 610 a 483 c 559 g 687 t ORIGIN 1 ggagacttga taattcatct tctagttgtg caacgagtgg tgattttcgg aaagattttg 61 cagctaatat tcgcaagttt gctgtaattg gaactcacga accttctgtg catatcattt 121 cgttggaacc tggagaagca tttcagcaac ttgctgttgg gcatatatca gtaaacaacg 181 cgctcggcac tcctatcagt ggttgtatac ctgaaaatgt taggtttgta gcagctgcaa 241 ggttctacat tcttgcagga ctaaggaatg gaatgctact gaggtttgag tcacaaacaa 301 gcaaagggca ttgtttccct ggttcctttt acaaggagtc ctctacccct tgtgatgata 361 catcccttat gttgattgct gtacggcgta ttggaatcac tcctgtagtt ttggtaccgt 421 tgcatgacag agccaatgct gacattattg ttctcggtga taggcctcgg ctattgcaat 481 ctgctagaca cagcttggca cattcatcca tctcatttct gcctgcttcc catgtgacac 541 cagtgtcttc tactgattgc cccagtggtc tgctgtttgt ttcggagaac tgtttgcatt 601 tggttgaaat ggttcatggc aaaagactaa atgcacagaa gttttcgatt ggagggactc 661 caaggaaagt gttataccac agtgatagta gaacactgtt ggtgctgaga actgggttaa 721 ccagtgtatc ctgttcttca gatattgttc aaatagatcc aagtaatggg gcattgcttt 781 ccagattcaa gtgcgaacct ggtgaaacag caaaatgcat gcaaattgca aagataggga 841 atgatcaagt attaatcgtt ggaactagta agtccaatgg ccgaccaatg atgccaaacg 901 gtgaagcaga aagtatcaag ggtcgtctaa ttcttttaag cttggagact attgaaagtc 961 ctcgtgagag cggttcgttt actgcagctt ctaatttgaa ttcatctcat gctggttctc 1021 cattcccgga atttgttgga tatgcagcag aggagctgtc tagtaacagc atgtgcagca 1081 gtcctgatga agtttgctgc aatcaaattc aacctgaact catggcaggc catttgagat 1141 cactagtcca acatacattc aatggcgctg ttcttgctgt acatccatat ctagatagat 1201 atgtgttggc agcagctgga aatgtgcttt ttgtatttgg attttttaaa tgaaagtccc 1261 catcggataa aaaagtatac tacgagtagg acacgattta caataacctg tttgaagacg 1321 tatgcatcac ggattgcagt gggtgattgc cgcgatggtg ttctcttcta ttcttatcat 1381 gagaatctta ggaagttgga actgatctat tctgatcctg cccaacggct agtgggtgat 1441 gttgcccttt tgagctgtga aactgctgtt gtatcagatc gacgagggag catatctgta 1501 ctgtcttgcc caagattaga agtatccgaa agtccagaga agaacctagc ggtgcattgt 1561 tcattttaca tgggtgaaac agctatgagc atccagaagg ttgcatttaa gcattggctt 1621 ccaattgatg atttgacaga accagtgttg gagtcggtat acaactgtgt cgtcgcaagc 1681 actctgctgg ggagtatctt tgttatgatt ccactcacaa gtgaggagca tcaaatgttg 1741 caagatgtcc aagaaagact ttcggttcac ccattgactg ctccactctt aggaaatgat 1801 catgcagagt ttcgtcgccg tggtatcccg tcgggagtac cgcccattct ggatggcgac 1861 atgcttgtgc agttcctgga gctcaccagc gaacaacagc acgatgttct caatattgtt 1921 tctcctggaa agaagaggca acacgatatc tcggttttcc aggtcatgcg agcattagag 1981 agggtgcatt acgcactcaa ctgaggcgtt caacaatcca ttcaacccgg tcactgttct 2041 taccgacatg gctgtctcca acctgctgat atttaggtgg catcatcgct gaatttggat 2101 ccgagccgag caccgagttg ttgcagctga agctgctact ggagcacata cccagaacat 2161 accaaatctc agctgtagtg aggtgctgtg ttttgctgtg ggatgatagg cccatctgat 2221 gtcgcaatag tgtgtcattg ctctagtgca atctttgtaa ataacgaata atattttggc 2281 agaaggatgt ggatacaaat ccttttgccc agtgaaagga acaaccctcg tgaacgcat //