LOCUS AK063988 1636 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-124-D12, full insert
sequence.
ACCESSION AK063988
VERSION AK063988.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1636)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1636
/clone="001-124-D12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1636
/db_xref="Osa1:LOC_Os09g28400"
/db_xref="RAP-DB:Os09g0457400"
/note="(RAP Annotation release2) Alpha-amylase isozyme 3A
precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase)"
/note="(Rice Genome Annotation Project) alpha-amylase
isozyme 3A precursor, putative, expressed"
/note="mapping to R09-TIGRv4S1-000469F (Chr.9: short
arm=17287992, long arm=17290252, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 352 a 503 c 496 g 285 t
ORIGIN
1 acgcagcaag agccgatcga tcattgtcca agtctccaag cgatcagcta gctgacttga
61 cgacgctgcg agcagcggca gcaagagagc agcagcacaa agggttcccc tttcacaagt
121 gtccggccgg ctgcacgtag gccatgggga agcaaatggc cgccctgtgt ggctttctcc
181 tcgtggcgtt gctctggctc acgcccgacg tcgcgcacgc gcagacgcag atcctcttcc
241 agggttttaa ctgggactcg tggaagaagc agggtggttg gtacaacatg ctcaaggacc
301 aggtgggcga catcgccagc gccggcgtca cgcacgtctg gctcccacct cccacgcact
361 ccgtctcgcc tcaaggctac atgccgggac agctctacga cctgaacgcg tccaagtacg
421 gcaccaaggc ggagctcaag tcgctcatcg ccgccttcca cgccaagggc atcaagtgcg
481 tcgcggacat cgtcgtcaac caccgctgcg ccgacgacaa ggacggccgc ggcgtctact
541 gcatcttcaa gggcggcggc ccgcgcggct gcctggactg gggcccctcc atgatctgct
601 gcgacgacac gcagtactcc gacggcacgg gccaccgcga caccggcgcc gacttcgccg
661 cggcgcccga tatcgaccac ctcaacccgc tcgtccagcg ggagctctcc gactggctca
721 ggtggctcag gagggatgtc ggcttcgacg gctggcgcct cgacttcgcc aagggctact
781 cggcggccgt cgccaggacg tatgtccaga acgccaggcc gagcttcgtc gtggcggaga
841 tatggaactc cctgagctac gacggcgacg ggaagccggc ggccaaccag gacggccagc
901 ggcaggagct cgtgaactgg gtgaagcagg ttggcggccc ggcgacggcg ttcgacttca
961 cgaccaaggg catcctgcag tcggcggtgc agggcgagct gtggcggatg cgggacaagg
1021 acggcaaggc gccgggcatg ataggctggt atcccgagaa ggccgtcacc ttcgtcgaca
1081 accacgacac cggctcgacg cagcggatgt ggccattccc gtctgacaag gtcattctgg
1141 gctacgccta catcctcacc cacccaggag taccatgcat cttctacgac cacgtgttcg
1201 actggaacct caagcaagag atcaacgcgc tggcggcgac gaggaagcgc aacgggataa
1261 acgccgggag caagctgcgc gtcctggcgg cggagagcga catgtacgtg gcgatggtcg
1321 acgagagggt catcaccaag atcgggccga gaatagacgt gggcaacata atcccgtcgg
1381 acttccacat cgtggctcat ggcaatgact actgcgtctg ggagaagagc ggccttagag
1441 tcccagaacc agaaggtcgg cgctagaaac ggctcgcaag ctagctacac agttcttaat
1501 aacttggtcg caaaaaaaaa agttcttaat aatttgtacg agaaatgttc gtttctgttt
1561 gcatatatag cttatgaaat cttaccaata tatactgctc tgttttctat agttcatccc
1621 ggaaatttga acttgc
//