LOCUS AK063973 1637 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-124-B08, full insert
sequence.
ACCESSION AK063973
VERSION AK063973.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1637)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1637
/clone="001-124-B08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1637
/db_xref="Osa1:LOC_Os05g48700"
/note="(Rice Genome Annotation Project) gibberellin
2-beta-dioxygenase, putative, expressed"
/note="mapping to R05-TIGRv4S1-001055R (Chr.5: short
arm=27827484, long arm=27829654, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 277 a 487 c 548 g 325 t
ORIGIN
1 acaagtgcaa acgtgcagca gcagaggcag caacacctcc cctgttcttg ctctgtttcc
61 tcactctgtt ggtacacaac aaaaagaaga agcttaatta ggtggttttt gatctgatca
121 cgcgccatgg tggcgatcac ggcgccgagc tccatcgagc acatcccgct ggtgaggtgc
181 cccaagggcg ccaatgccgg gccgcaagct gtcatcccgt gcatcgacct gtcggcaccg
241 ggcgcggcgg cggcggtggc cgacgcgtgc cgcaccctgg ggttcttcaa ggcgaccaac
301 cacggcgtcc ccgcggggct cgccgacgcg ttggagtcga gcgccatggc gttcttcgcg
361 ctcccgcacc aggagaagct cgacatgtcc ggccccgccc ggcccctcgg ctacggcagc
421 aagagcatcg ggtcgaacgg cgacgtgggg tggctggagt acctcctcct ctcggccggc
481 gccgcctcgt ccggcggcgc ggcgctgccg gcggcgctga gggcggcggt ggaggcgtac
541 acgggggcgg tgaggggggt ggggtgcagg gtgatggagc tgatggcgga ggggctgggg
601 ctgggggcgt cggaggaggg gaggtgcgtg ctgcggcgga tggtggtggg gtgcgagggc
661 agcgacgaga tgctgcgggt gaaccactac ccgccgtgcc tcctcccgcc gggccgcgac
721 cgggacgagt gcggcgtgac gggcttcggg gagcacacgg acccacagat catctccgtg
781 ctcaggtcca actgcaccgc gggcctccag atcctcctcc gcggagacta ctcctcccct
841 gcccgctggg tccccgtgcc ccccgacccc gattccttct tcgtcaacgt cggcgactcc
901 ctccaagtgt tgacgaatgg gaggttcagg agcgtgatct acttcggcgg gccagcggcg
961 tcgcagcgga tcgcgccgct ggagcaggtg atgcgggagg gggagcagag cctgtacagg
1021 gagttcacct ggggggagta caagaaggcc gcctacaaga cgcgcctcgg cgacaaccgc
1081 ctcggcccct acgagctgca gcacgccgct gccaacgatg aggccgcgac gaagaaataa
1141 atcgatcaac ccgacgactg tgaacaactg tgaagtgtta ctgtactagt gtagttagct
1201 ccgtggtact ggtagctgtg aatatgatcg agatcgatcg atcgatcgat ctatccttgt
1261 gttgtgttac ttttaaccca tttctggtaa ctaaaggccg ccgttgcctt ggcttgcttg
1321 gccagcccaa aactggcact ggcgagctgc ctcctcctgc atgcctctgc tgtgcagtag
1381 tgcagcagta ctcctctgtc ctggggtttt ctgcagcaga gcagtggagt gcagttcagt
1441 gcagcgttgt gcatgttgtg taaaatagct tgccgcatgc atatgtgatt atgtgctgct
1501 cctgtcgacg ctgccgcccc ttttgtagca tggtttttac cggctgggcg gtcggcaggt
1561 gcagtagtag ctaatgatgc ttactgcgcc atacgagtgt acctatatgt gtgctatatg
1621 tgtgctacct ccgttcc
//