LOCUS AK061645 2363 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-036-B07, full insert
sequence.
ACCESSION AK061645
VERSION AK061645.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2363)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2363
/clone="001-036-B07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 127..1905
/db_xref="Osa1:LOC_Os05g49140"
/note="(Rice Genome Annotation Project) OsMPK20-5 -
putative MAPK based on amino acid sequence homology,
expressed"
/note="mapping to R05-TIGRv4S1-001073R (Chr.5: short
arm=28105620, long arm=28110750, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG88045.1"
/translation="MPEANAGGRAAPAAEQRSKNTTEMDFFSEYGDSSRYKIQEIVGK
GSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIM
LPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYH
RDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFSK
YSPAIDTWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDAISRIRNDKARR
YLSSMRRKQPVPFSEKFPNVDPLALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKVE
REPSCQPISKMEFEFERRKVTKDDIKELIFREILEYHPQLLKDYMNGSENTSFLYPSA
VDNFRRQFAILEENGGKSGALDRKHVSLPRATTVHSTSIPPNEGLDATSQVTQRIPTA
RPGRTVGPVLPFENPGAADPHSARRVVRNPMVPPAAANKSGYSYNLKSDYSDRQHQEE
LEKDRVQYRPAQHLMDAKVAPDTAPDIRSSQYYFTRSAPRTDLTDRAALQGSMLYGIA
PFNGIAAVAGGYSKVGAVQYGVSRMY"
BASE COUNT 670 a 498 c 578 g 617 t
ORIGIN
1 gcaccgctac actactcggc tcggctgctt cttcttctcc ttctcctcat cctccacatc
61 gctgcggatt cgagcggcga ggcttggatt ttctcccggc gagatctccc cggcggccgt
121 ctcgcgatgc ctgaggcaaa tgcgggtggg cgggcggcgc cggcggcgga gcagcggagc
181 aagaacacaa cagagatgga tttcttcagt gaatatggtg actccagccg atacaaaatt
241 caagaaatcg ttggtaaagg aagttatgga gttgtttgtt cagctattga ccaacatacc
301 ggtgacaaag tagcaatcaa gaaaatacac aatatctttg agcatctatc tgatgctgct
361 aggatcctcc gtgagatcaa acttctccgg cttttacggc atcctgatat tgtcgagatc
421 aaacatataa tgttacctcc atctagaagg gacttcaaag atatttatgt tgtcttcgaa
481 ctgatggata cagacctcca ccaggttatt aaggctaatg atgacttaac gaaggaacat
541 catcagttct ttctgtatca aatgcttcga gcattgaaat atatccatac tgctaatgtt
601 tatcatcgtg atttaaagcc caaaaatata ttagcaaatg ctaactgtaa gctcaagata
661 tgtgattttg gactagcaag agttgcattt aatgacactc ctacaacagt tttctggacg
721 gactacgttg caactagatg gtacagggct cctgagctgt gtgggtcttt cttttctaag
781 tattcaccag ctatagatac atggagtatt ggttgcattt ttgcggagat tttgactgga
841 aaacctttgt tccctggtaa aaatgtggtt catcaattgg acttgatgac tgatctcttg
901 ggtacaccat caatggatgc tatttcaagg attcggaatg acaaggcaag gaggtatctg
961 agcagcatga ggaggaagca gccagtacct ttttcagaaa agttcccaaa tgtagatcct
1021 ttggcactca agctcttaca aaggcttcta gcatttgatc cgaaggatcg acctactgca
1081 gaagaggcgt tggctgatcc atattttaaa ggccttgcaa aagtggagag agaaccatca
1141 tgccaaccaa tttcaaaaat ggagtttgag tttgagcgaa gaaaggttac caaagatgat
1201 atcaaggaac ttatattccg tgagatatta gagtatcatc ctcagcttct gaaggattac
1261 atgaatggct ccgaaaacac gagctttcta tatccaagtg ctgttgataa tttccggagg
1321 caatttgcca tcttagagga aaacggagga aagagtggtg cactagatag gaagcatgtt
1381 tctcttccaa gggctacaac agttcactct acatcaattc ctccaaatga aggcctagat
1441 gcaacatccc aagttactca aaggatccca acagctagac caggaagaac ggttggtccg
1501 gtattaccat tcgagaatcc aggcgccgca gatccgcaca gcgcacggag ggtggtgagg
1561 aatccgatgg ttcctccagc agctgccaac aagtcaggat acagctacaa cctaaagtca
1621 gactactctg ataggcaaca tcaggaagag cttgagaaag atcgtgtgca gtacaggcct
1681 gcacaacact tgatggatgc taaagttgct ccagatacag ccccggacat acggtcttca
1741 caatactact ttacgaggag tgctcccaga actgatctaa cagacagggc tgcactccag
1801 gggagcatgc tatacggcat tgctccgttc aacggcatcg cagcagttgc tggtggatac
1861 agcaaggttg gtgccgttca atatggtgtt tcaaggatgt actagagttt tagtcaggca
1921 gttgtggaat tgctccatag atgagcaaga tgggaatgcc ggagcatggc tttgtgttgt
1981 gcccatccac ccagatataa ggctggcaag ggaattggtc gcatctggtc atggatgcag
2041 gcgaaggttg aagaaaggag aagggaaact cctattccat ctcaggcggc cattgtccat
2101 ttgaaatggc agtgagctcg cgatggtgaa agaggaaaag agggagagaa agttcatggt
2161 ggaatttctc gcactttatt tgttgtggag aaaaggagaa aatgtgaata acagcactag
2221 gctgggcttg tgtacatacc tgcaaccctt gatttttttt tcttgttttc ttgctagaag
2281 ctgttgcttc ttgtgtaaac ctgcaaaagc atactccgaa aatgaatcat tcgccaaaaa
2341 attgagacgg cggattattt ggt
//