LOCUS       AK060270                1749 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-005-E09, full insert
            sequence.
ACCESSION   AK060270
VERSION     AK060270.1
KEYWORDS    oligo-capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1749
                     /clone="001-005-E09"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             97..1599
                     /db_xref="Osa1:LOC_Os09g12660"
                     /note="(Rice Genome Annotation Project)
                     glucose-1-phosphate adenylyltransferase small subunit,
                     chloroplast precursor, putative, expressed"
                     /note="mapping to R09-TIGRv4S1-000178R (Chr.9: short
                     arm=7244592, long arm=7248770, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG87387.1"
                     /translation="MAMMAMGAASWAPIPAPARAAAAFYPGRDLAAARRRRGAAARRP
                     FVFTPRAVSDSRSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYR
                     LIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP
                     ENPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYQKFIQAHRETNADITVA
                     ALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKSMMVDTTILGLDTERAKELPYI
                     ASMGIYVFSKDVMLKLLRQNFPAANDFGSEVIPGATEIGMRVQAYLYDGYWEDIGTIE
                     AFYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDADVTDSVIGEGCVIRHCT
                     INHSVVGLRSCISEGAVIEDSLLMGADYYETETDKKALSETGGIPIGIGKNAHIRKAI
                     IDKNARIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIPSGTVI"
BASE COUNT          457 a          392 c          466 g          434 t
ORIGIN      
        1 gaaaaaaaga gggaactttt cacggccgct gaagcctctg acactccact gtagtgtgtc
       61 agtactccgg ccacctctct cggccgttgc tctcccatgg cgatgatggc gatgggcgcg
      121 gcgtcctggg ccccgatccc ggcgccggcg agggcggcgg ccgcattcta tcccggccgc
      181 gatcttgcgg cggcgaggcg gcggcgtggg gcggcggcga ggaggccgtt cgtgttcacg
      241 ccgcgtgccg tgtcggactc ccggagctcg cagacgtgcc tcgatccgga cgccagcacg
      301 agtgttcttg ggatcatcct tggaggtggt gctgggacaa ggctgtatcc gctgacaaag
      361 aagagggcga agccggcggt gccgttgggt gctaattaca ggctcataga tatcccggtc
      421 agcaactgtc tgaacagcaa tgtgtcgaag atctatgtcc tgacacagtt caactccgcg
      481 tcgctcaatc gtcacctctc gagggcctat ggaaacaaca ttggtggtta caagaacgag
      541 gggtttgttg aagttcttgc tgcgcagcag agcccagaga atcctaactg gtttcagggt
      601 actgcagatg ctgtgcgaca atacttatgg ctatttgagg aacacaatgt tatggagttt
      661 ctcattttgg ctggagatca cctgtaccgt atggactacc aaaagttcat tcaggcccac
      721 agagaaacaa atgctgatat aaccgttgct gcgctgccca tggatgaaga acgtgctaca
      781 gcatttggcc ttatgaagat tgatgatgaa gggaggatca ttgaatttgc agaaaagcca
      841 aaaggagaga agttgaaatc aatgatggtt gacactacca tacttggcct tgatactgag
      901 agggcaaagg aattgcctta cattgctagt atgggaatct atgtttttag caaagatgtg
      961 atgcttaagc ttctccgtca aaatttccct gctgcaaatg actttggaag cgaggttatt
     1021 cctggagcaa cagaaattgg aatgagggtg caagcttact tatatgatgg ttactgggaa
     1081 gatattggta ctatagaggc attctacaat gccaacttgg ggataaccaa gaaacctgtg
     1141 ccagatttta gcttctatga ccgttctgcc gcaatttata cgcaacctcg atacttgcct
     1201 ccatcaaaag ttcttgatgc tgatgtgaca gacagtgtta ttggtgaagg ttgtgttatt
     1261 agacattgca caatcaacca ttctgtggtt ggactccggt cctgtatatc tgaaggcgca
     1321 gtgatagagg actctctgct aatgggtgca gactattatg agacggagac ggacaagaaa
     1381 gccctttctg agactggtgg cattcccatt ggtattggaa agaatgcaca catcagaaaa
     1441 gcaataattg acaagaatgc tcgtattgga gaaaatgtta agataatcaa tgtcgacaat
     1501 atccaagaag cttcaaggga gactgatgga tacttcatca aaagtggcat tgtcactgtg
     1561 atcaaggacg ccttaatccc tagcggaaca gtcatataaa ggcaaccaat caccactgta
     1621 cataaggttg ggccttgcag catatggtga tctgatctcc agtgcacatc aagcaatcaa
     1681 cttttaacgc tgtggtttat tccatgctgc cagttcacca agctctgcat caacttgcaa
     1741 ggatatcat
//