LOCUS AK060270 1749 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-005-E09, full insert sequence. ACCESSION AK060270 VERSION AK060270.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1749) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1749 /clone="001-005-E09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 97..1599 /db_xref="Osa1:LOC_Os09g12660" /note="(Rice Genome Annotation Project) glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed" /note="mapping to R09-TIGRv4S1-000178R (Chr.9: short arm=7244592, long arm=7248770, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG87387.1" /translation="MAMMAMGAASWAPIPAPARAAAAFYPGRDLAAARRRRGAAARRP FVFTPRAVSDSRSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYR LIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP ENPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYQKFIQAHRETNADITVA ALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKSMMVDTTILGLDTERAKELPYI ASMGIYVFSKDVMLKLLRQNFPAANDFGSEVIPGATEIGMRVQAYLYDGYWEDIGTIE AFYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDADVTDSVIGEGCVIRHCT INHSVVGLRSCISEGAVIEDSLLMGADYYETETDKKALSETGGIPIGIGKNAHIRKAI IDKNARIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIPSGTVI" BASE COUNT 457 a 392 c 466 g 434 t ORIGIN 1 gaaaaaaaga gggaactttt cacggccgct gaagcctctg acactccact gtagtgtgtc 61 agtactccgg ccacctctct cggccgttgc tctcccatgg cgatgatggc gatgggcgcg 121 gcgtcctggg ccccgatccc ggcgccggcg agggcggcgg ccgcattcta tcccggccgc 181 gatcttgcgg cggcgaggcg gcggcgtggg gcggcggcga ggaggccgtt cgtgttcacg 241 ccgcgtgccg tgtcggactc ccggagctcg cagacgtgcc tcgatccgga cgccagcacg 301 agtgttcttg ggatcatcct tggaggtggt gctgggacaa ggctgtatcc gctgacaaag 361 aagagggcga agccggcggt gccgttgggt gctaattaca ggctcataga tatcccggtc 421 agcaactgtc tgaacagcaa tgtgtcgaag atctatgtcc tgacacagtt caactccgcg 481 tcgctcaatc gtcacctctc gagggcctat ggaaacaaca ttggtggtta caagaacgag 541 gggtttgttg aagttcttgc tgcgcagcag agcccagaga atcctaactg gtttcagggt 601 actgcagatg ctgtgcgaca atacttatgg ctatttgagg aacacaatgt tatggagttt 661 ctcattttgg ctggagatca cctgtaccgt atggactacc aaaagttcat tcaggcccac 721 agagaaacaa atgctgatat aaccgttgct gcgctgccca tggatgaaga acgtgctaca 781 gcatttggcc ttatgaagat tgatgatgaa gggaggatca ttgaatttgc agaaaagcca 841 aaaggagaga agttgaaatc aatgatggtt gacactacca tacttggcct tgatactgag 901 agggcaaagg aattgcctta cattgctagt atgggaatct atgtttttag caaagatgtg 961 atgcttaagc ttctccgtca aaatttccct gctgcaaatg actttggaag cgaggttatt 1021 cctggagcaa cagaaattgg aatgagggtg caagcttact tatatgatgg ttactgggaa 1081 gatattggta ctatagaggc attctacaat gccaacttgg ggataaccaa gaaacctgtg 1141 ccagatttta gcttctatga ccgttctgcc gcaatttata cgcaacctcg atacttgcct 1201 ccatcaaaag ttcttgatgc tgatgtgaca gacagtgtta ttggtgaagg ttgtgttatt 1261 agacattgca caatcaacca ttctgtggtt ggactccggt cctgtatatc tgaaggcgca 1321 gtgatagagg actctctgct aatgggtgca gactattatg agacggagac ggacaagaaa 1381 gccctttctg agactggtgg cattcccatt ggtattggaa agaatgcaca catcagaaaa 1441 gcaataattg acaagaatgc tcgtattgga gaaaatgtta agataatcaa tgtcgacaat 1501 atccaagaag cttcaaggga gactgatgga tacttcatca aaagtggcat tgtcactgtg 1561 atcaaggacg ccttaatccc tagcggaaca gtcatataaa ggcaaccaat caccactgta 1621 cataaggttg ggccttgcag catatggtga tctgatctcc agtgcacatc aagcaatcaa 1681 cttttaacgc tgtggtttat tccatgctgc cagttcacca agctctgcat caacttgcaa 1741 ggatatcat //