LOCUS       AK059230                1961 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-024-E03, full insert
            sequence.
ACCESSION   AK059230
VERSION     AK059230.1
KEYWORDS    oligo-capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1961)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1961
                     /clone="001-024-E03"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..1961
                     /db_xref="Osa1:LOC_Os02g53680"
                     /note="(Rice Genome Annotation Project) replication
                     protein A 70 kDa DNA-binding subunit, putative, expressed"
                     /note="mapping to R02-TIGRv4S1-001465R (Chr.2: short
                     arm=32826962, long arm=32828924, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT          542 a          422 c          466 g          531 t
ORIGIN      
        1 gcaatttaac ggagcacctc aatatggttt gatggcaggg aactcatcaa atacaaccac
       61 aaagcctagt gacaatgttc cattgttcca aaattcgatg gcaggaaact cctctaactt
      121 tgccactagg cccagtgaca aagttccggt cttccaacca acagtccagc catcttatcg
      181 ccctgcacct aattacaaaa accatggagc aatcatgaaa aatgaagccc ctgctagaat
      241 aatccccata tctgctttaa atccttatca aggccgctgg gctatcaagg ctagagttac
      301 tgccaaggga gatatccgcc gataccataa tgctaaaggt gatgggaaag tattctcttt
      361 tgacttgctt gattctgatg ggggagagat acgggtgaca tgcttcaatg ctcttcttga
      421 tcgattctat gaagttgtgg aagttggtaa ggtctatgtg gtatcaagag gaaacttgag
      481 acctgcacag aagaactata accatcttaa caatgagtgg gagattttat tggagaatgg
      541 atcaactgtg gatctttgtc ctgatgagaa cagttccatt cccacccagc ggtttgactt
      601 cagaccgatc aatgaaattg aggatgccca gaacaatgct atccttgaca tcataggtgt
      661 tgttacatcg gtcaatcctt gcaccacaat acagaggaaa tggcatggaa actcagaaaa
      721 gaactatgaa cctgaaggat atgtctggtc gaagtgttga ggtaaccatg tggggtgact
      781 tttgcaacag agaaggctca cagcttcaag gaatggttga acgtgggatc tttcctgtgc
      841 tggctgtcaa agcaggaaaa gtgagtgatt tcagtggcaa gtctgtcggc acaatttctt
      901 caactcagct cttcatcaac cctgattctg ctgaagctca tagtctcagg caatggtttg
      961 atagtggagg aagagatgct tctactcagt ccatatccag agatatcacg cctggagcat
     1021 caaggaatga gatccgaaag acagtagcac agatcaagga tgaaggtctt ggaatggggg
     1081 acaaacctga ctggattacg gtgaaagcca ccgttatatt cttcaagaat gagtccttct
     1141 tctacacagc ttgccctaac atgattggcg acaggcagtg caataagaag gtgacaaaga
     1201 gtactaatgg caattggacc tgtgacaaat gcgataggga gtttgaagag tgcgactaca
     1261 ggtatctcct gcagtttcag attcaagatc actcgggaac agcttgggtg acagcattcc
     1321 aggaggctgg gcaggagttg cttggctgct cggcaacaga gctcaacgca cttaaggagc
     1381 gcgaggaccc tcggtttgca gacaccatgc tcaattgctt gtttcaggaa tatctgctca
     1441 ggctgaaggt caaagaagaa tcatacggcg atgagcgcaa agtgaagaac accgcggtca
     1501 aagtggagaa ggttgatcct tcgggtgaaa gtaaatttct gctggatttg atctccaagt
     1561 cctcggcgct acattagcag actgtgctac tctatcagct gctcgctcgt gcgtggtgag
     1621 gtgagcgagg tgaggtgttg cagtgcccat agccctcgcc ctcctgctcg atttttgtgc
     1681 cggtacttta atattaacgc cacttaatag tttatatcca gattagtgct ttaatagttt
     1741 atatccagat tagtgctgat atttccattt ttgtgccggt actttaatat taacgccact
     1801 taatgtatca gcttttatac ctttttctcg atcaaatgat tgccttctag ctgcagtgca
     1861 atttctccct tagttttggt ttgtacatgc ctgcaaagcc ttactctgtc gcgactaaga
     1921 aatctcttgt gctcttccat gcaatcgaac atctgtttta c
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