LOCUS AK059230 1961 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-024-E03, full insert sequence. ACCESSION AK059230 VERSION AK059230.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1961) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1961 /clone="001-024-E03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1961 /db_xref="Osa1:LOC_Os02g53680" /note="(Rice Genome Annotation Project) replication protein A 70 kDa DNA-binding subunit, putative, expressed" /note="mapping to R02-TIGRv4S1-001465R (Chr.2: short arm=32826962, long arm=32828924, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 542 a 422 c 466 g 531 t ORIGIN 1 gcaatttaac ggagcacctc aatatggttt gatggcaggg aactcatcaa atacaaccac 61 aaagcctagt gacaatgttc cattgttcca aaattcgatg gcaggaaact cctctaactt 121 tgccactagg cccagtgaca aagttccggt cttccaacca acagtccagc catcttatcg 181 ccctgcacct aattacaaaa accatggagc aatcatgaaa aatgaagccc ctgctagaat 241 aatccccata tctgctttaa atccttatca aggccgctgg gctatcaagg ctagagttac 301 tgccaaggga gatatccgcc gataccataa tgctaaaggt gatgggaaag tattctcttt 361 tgacttgctt gattctgatg ggggagagat acgggtgaca tgcttcaatg ctcttcttga 421 tcgattctat gaagttgtgg aagttggtaa ggtctatgtg gtatcaagag gaaacttgag 481 acctgcacag aagaactata accatcttaa caatgagtgg gagattttat tggagaatgg 541 atcaactgtg gatctttgtc ctgatgagaa cagttccatt cccacccagc ggtttgactt 601 cagaccgatc aatgaaattg aggatgccca gaacaatgct atccttgaca tcataggtgt 661 tgttacatcg gtcaatcctt gcaccacaat acagaggaaa tggcatggaa actcagaaaa 721 gaactatgaa cctgaaggat atgtctggtc gaagtgttga ggtaaccatg tggggtgact 781 tttgcaacag agaaggctca cagcttcaag gaatggttga acgtgggatc tttcctgtgc 841 tggctgtcaa agcaggaaaa gtgagtgatt tcagtggcaa gtctgtcggc acaatttctt 901 caactcagct cttcatcaac cctgattctg ctgaagctca tagtctcagg caatggtttg 961 atagtggagg aagagatgct tctactcagt ccatatccag agatatcacg cctggagcat 1021 caaggaatga gatccgaaag acagtagcac agatcaagga tgaaggtctt ggaatggggg 1081 acaaacctga ctggattacg gtgaaagcca ccgttatatt cttcaagaat gagtccttct 1141 tctacacagc ttgccctaac atgattggcg acaggcagtg caataagaag gtgacaaaga 1201 gtactaatgg caattggacc tgtgacaaat gcgataggga gtttgaagag tgcgactaca 1261 ggtatctcct gcagtttcag attcaagatc actcgggaac agcttgggtg acagcattcc 1321 aggaggctgg gcaggagttg cttggctgct cggcaacaga gctcaacgca cttaaggagc 1381 gcgaggaccc tcggtttgca gacaccatgc tcaattgctt gtttcaggaa tatctgctca 1441 ggctgaaggt caaagaagaa tcatacggcg atgagcgcaa agtgaagaac accgcggtca 1501 aagtggagaa ggttgatcct tcgggtgaaa gtaaatttct gctggatttg atctccaagt 1561 cctcggcgct acattagcag actgtgctac tctatcagct gctcgctcgt gcgtggtgag 1621 gtgagcgagg tgaggtgttg cagtgcccat agccctcgcc ctcctgctcg atttttgtgc 1681 cggtacttta atattaacgc cacttaatag tttatatcca gattagtgct ttaatagttt 1741 atatccagat tagtgctgat atttccattt ttgtgccggt actttaatat taacgccact 1801 taatgtatca gcttttatac ctttttctcg atcaaatgat tgccttctag ctgcagtgca 1861 atttctccct tagttttggt ttgtacatgc ctgcaaagcc ttactctgtc gcgactaaga 1921 aatctcttgt gctcttccat gcaatcgaac atctgtttta c //